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Estimating Effect Sizes of Differentially Expressed Genes for Power and Sample-Size Assessments in Microarray Experiments

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  • Shigeyuki Matsui
  • Hisashi Noma

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  • Shigeyuki Matsui & Hisashi Noma, 2011. "Estimating Effect Sizes of Differentially Expressed Genes for Power and Sample-Size Assessments in Microarray Experiments," Biometrics, The International Biometric Society, vol. 67(4), pages 1225-1235, December.
    • Handle: RePEc:bla:biomet:v:67:y:2011:i:4:p:1225-1235
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    File URL: http://hdl.handle.net/10.1111/j.1541-0420.2011.01618.x
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    References listed on IDEAS

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    1. Yoav Benjamini & Yosef Hochberg, 2000. "On the Adaptive Control of the False Discovery Rate in Multiple Testing With Independent Statistics," Journal of Educational and Behavioral Statistics, , vol. 25(1), pages 60-83, March.
    2. Efron, Bradley, 2009. "Empirical Bayes Estimates for Large-Scale Prediction Problems," Journal of the American Statistical Association, American Statistical Association, vol. 104(487), pages 1015-1028.
    3. Efron, Bradley, 2004. "Large-Scale Simultaneous Hypothesis Testing: The Choice of a Null Hypothesis," Journal of the American Statistical Association, American Statistical Association, vol. 99, pages 96-104, January.
    4. John D. Storey & Jonathan E. Taylor & David Siegmund, 2004. "Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: a unified approach," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 66(1), pages 187-205, February.
    5. Raphael Gottardo & Adrian E. Raftery & Ka Yee Yeung & Roger E. Bumgarner, 2006. "Bayesian Robust Inference for Differential Gene Expression in Microarrays with Multiple Samples," Biometrics, The International Biometric Society, vol. 62(1), pages 10-18, March.
    6. Shigeyuki Matsui & Shu Zeng & Takeharu Yamanaka & John Shaughnessy, 2008. "Sample Size Calculations Based on Ranking and Selection in Microarray Experiments," Biometrics, The International Biometric Society, vol. 64(1), pages 217-226, March.
    7. Mette Langaas & Bo Henry Lindqvist & Egil Ferkingstad, 2005. "Estimating the proportion of true null hypotheses, with application to DNA microarray data," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(4), pages 555-572, September.
    8. John D. Storey, 2002. "A direct approach to false discovery rates," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 64(3), pages 479-498, August.
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    Citations

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    Cited by:

    1. Zehetmayer Sonja & Graf Alexandra C. & Posch Martin, 2015. "Sample size reassessment for a two-stage design controlling the false discovery rate," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 14(5), pages 429-442, November.
    2. van Iterson Maarten & van de Wiel Mark A. & Boer Judith M. & de Menezes Renée X., 2013. "General power and sample size calculations for high-dimensional genomic data," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 12(4), pages 449-467, August.

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