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Bayesian Models for Gene Expression With DNA Microarray Data

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  • Ibrahim J. G.
  • Chen M-H.
  • Gray R. J.

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  • Ibrahim J. G. & Chen M-H. & Gray R. J., 2002. "Bayesian Models for Gene Expression With DNA Microarray Data," Journal of the American Statistical Association, American Statistical Association, vol. 97, pages 88-99, March.
    • Handle: RePEc:bes:jnlasa:v:97:y:2002:m:march:p:88-99
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    Cited by:

    1. E. M. Conlon & B. L. Postier & B. A. Methe & K. P. Nevin & D. R. Lovley, 2009. "Hierarchical Bayesian meta-analysis models for cross-platform microarray studies," Journal of Applied Statistics, Taylor & Francis Journals, vol. 36(10), pages 1067-1085.
    2. Brian Caffo & Liu Dongmei & Giovanni Parmigiani, 2004. "Power Conjugate Multilevel Models with Applications to Genomics," Johns Hopkins University Dept. of Biostatistics Working Paper Series 1062, Berkeley Electronic Press.
    3. Nott, David J. & Yu, Zeming & Chan, Eva & Cotsapas, Chris & Cowley, Mark J. & Pulvers, Jeremy & Williams, Rohan & Little, Peter, 2007. "Hierarchical Bayes variable selection and microarray experiments," Journal of Multivariate Analysis, Elsevier, vol. 98(4), pages 852-872, April.
    4. Lian, Heng, 2010. "Sparse Bayesian hierarchical modeling of high-dimensional clustering problems," Journal of Multivariate Analysis, Elsevier, vol. 101(7), pages 1728-1737, August.
    5. Caffo Brian S & Liu Dongmei & Scharpf Robert B. & Parmigiani Giovanni, 2009. "Likelihood Estimation of Conjugacy Relationships in Linear Models with Applications to High-Throughput Genomics," The International Journal of Biostatistics, De Gruyter, vol. 5(1), pages 1-25, May.
    6. Ji, Yuan & Tsui, Kam-Wah & Kim, KyungMann, 2006. "A two-stage empirical Bayes method for identifying differentially expressed genes," Computational Statistics & Data Analysis, Elsevier, vol. 50(12), pages 3592-3604, August.
    7. Erin M Conlon & Bradley L Postier & Barbara A Methé & Kelly P Nevin & Derek R Lovley, 2012. "A Bayesian Model for Pooling Gene Expression Studies That Incorporates Co-Regulation Information," PLOS ONE, Public Library of Science, vol. 7(12), pages 1-8, December.
    8. Mao, Guangyu, 2014. "A new test of independence for high-dimensional data," Statistics & Probability Letters, Elsevier, vol. 93(C), pages 14-18.
    9. HyungJun Cho & Jaewoo Kang & Jae Lee, 2009. "Empirical Bayes analysis of unreplicated microarray data," Computational Statistics, Springer, vol. 24(3), pages 393-408, August.
    10. Izmirlian, Grant, 2020. "Strong consistency and asymptotic normality for quantities related to the Benjamini–Hochberg false discovery rate procedure," Statistics & Probability Letters, Elsevier, vol. 160(C).
    11. Hong, Zhaoping & Lian, Heng, 2012. "BOPA: A Bayesian hierarchical model for outlier expression detection," Computational Statistics & Data Analysis, Elsevier, vol. 56(12), pages 4146-4156.
    12. Schott, James R., 2007. "A test for the equality of covariance matrices when the dimension is large relative to the sample sizes," Computational Statistics & Data Analysis, Elsevier, vol. 51(12), pages 6535-6542, August.
    13. Liangliang Zhang & Yushu Shi & Robert R. Jenq & Kim‐Anh Do & Christine B. Peterson, 2021. "Bayesian compositional regression with structured priors for microbiome feature selection," Biometrics, The International Biometric Society, vol. 77(3), pages 824-838, September.
    14. Debashis Ghosh & Arul Chinnaiyan, 2004. "Covariate adjustment in the analysis of microarray data from clinical studies," The University of Michigan Department of Biostatistics Working Paper Series 1030, Berkeley Electronic Press.
    15. Liang Yulan & Kelemen Arpad, 2016. "Bayesian state space models for dynamic genetic network construction across multiple tissues," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 15(4), pages 273-290, August.
    16. Elisa C. J. Maria & Isabel Salazar & Luis Sanz & Miguel A. Gómez-Villegas, 2020. "Using Copula to Model Dependence When Testing Multiple Hypotheses in DNA Microarray Experiments: A Bayesian Approximation," Mathematics, MDPI, vol. 8(9), pages 1-22, September.
    17. Chakraborty, Sounak & Lozano, Aurelie C., 2019. "A graph Laplacian prior for Bayesian variable selection and grouping," Computational Statistics & Data Analysis, Elsevier, vol. 136(C), pages 72-91.
    18. Scholtens, Denise & Miron, Alexander & M. Merchant, Faisal & Miller, Arden & L. Miron, Penelope & Dirk Iglehart, J. & Gentleman, Robert, 2004. "Analyzing factorial designed microarray experiments," Journal of Multivariate Analysis, Elsevier, vol. 90(1), pages 19-43, July.

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