IDEAS home Printed from https://ideas.repec.org/a/wly/envmet/v31y2020i4ne2608.html
   My bibliography  Save this article

Bayesian spatial analysis of hardwood tree counts in forests via MCMC

Author

Listed:
  • Reihaneh Entezari
  • Patrick E. Brown
  • Jeffrey S. Rosenthal

Abstract

In this paper, we use a Bayesian spatial model to spatially interpolate forest inventory data from the Timiskaming and Abitibi River forests in Ontario, Canada. We consider a Bayesian generalized linear geostatistical model and implement a Markov chain Monte Carlo algorithm to sample from its posterior distribution. How spatial predictions for new sites in the forests change as the amount of training data is reduced is studied and compared with a Bayesian logistic regression model without a spatial effect. Finally, we discuss a stratified sampling approach for selecting subsets of data that allows for potential better predictions.

Suggested Citation

  • Reihaneh Entezari & Patrick E. Brown & Jeffrey S. Rosenthal, 2020. "Bayesian spatial analysis of hardwood tree counts in forests via MCMC," Environmetrics, John Wiley & Sons, Ltd., vol. 31(4), June.
    • Handle: RePEc:wly:envmet:v:31:y:2020:i:4:n:e2608
    DOI: 10.1002/env.2608
    as

    Download full text from publisher

    File URL: https://doi.org/10.1002/env.2608
    Download Restriction: no
    File URL: https://libkey.io/10.1002/env.2608?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Zhang, Hao, 2004. "Inconsistent Estimation and Asymptotically Equal Interpolations in Model-Based Geostatistics," Journal of the American Statistical Association, American Statistical Association, vol. 99, pages 250-261, January.
    2. Håvard Rue & Sara Martino & Nicolas Chopin, 2009. "Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(2), pages 319-392, April.
    3. Giorgi, Emanuele & Diggle, Peter J., 2017. "PrevMap: An R Package for Prevalence Mapping," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 78(i08).
    4. Lelys Bravo Guenni & Susan J. Simmons & Benjamin A. Shaby & Brian J. Reich, 2012. "Bayesian spatial extreme value analysis to assess the changing risk of concurrent high temperatures across large portions of European cropland," Environmetrics, John Wiley & Sons, Ltd., vol. 23(8), pages 638-648, December.
    5. Gareth O. Roberts & Jeffrey S. Rosenthal, 1998. "Optimal scaling of discrete approximations to Langevin diffusions," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 60(1), pages 255-268.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Leonie Netter & Eike Luedeling & Cory Whitney, 2022. "Agroforestry and reforestation with the Gold Standard-Decision Analysis of a voluntary carbon offset label," Mitigation and Adaptation Strategies for Global Change, Springer, vol. 27(2), pages 1-26, February.
    2. KWON, Heeeun & HWANG, Beom Seuk, 2023. "Do Spatial Characteristics Affect Housing Prices in Korea? : Evidence from Bayesian Spatial Models," Hitotsubashi Journal of Economics, Hitotsubashi University, vol. 64(2), pages 109-124, December.
    3. Jaewoo Park & Sangwan Lee, 2022. "A projection‐based Laplace approximation for spatial latent variable models," Environmetrics, John Wiley & Sons, Ltd., vol. 33(1), February.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Gael M. Martin & David T. Frazier & Christian P. Robert, 2020. "Computing Bayes: Bayesian Computation from 1763 to the 21st Century," Monash Econometrics and Business Statistics Working Papers 14/20, Monash University, Department of Econometrics and Business Statistics.
    2. Anandamayee Majumdar & Corinna Gries & Jason Walker, 2011. "A non-stationary spatial generalized linear mixed model approach for studying plant diversity," Journal of Applied Statistics, Taylor & Francis Journals, vol. 38(9), pages 1935-1950, October.
    3. Jaewoo Park & Sangwan Lee, 2022. "A projection‐based Laplace approximation for spatial latent variable models," Environmetrics, John Wiley & Sons, Ltd., vol. 33(1), February.
    4. David L. Miller & Richard Glennie & Andrew E. Seaton, 2020. "Understanding the Stochastic Partial Differential Equation Approach to Smoothing," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 25(1), pages 1-16, March.
    5. Dang, Khue-Dung & Quiroz, Matias & Kohn, Robert & Tran, Minh-Ngoc & Villani, Mattias, 2019. "Hamiltonian Monte Carlo with Energy Conserving Subsampling," Working Paper Series 372, Sveriges Riksbank (Central Bank of Sweden).
    6. Giovanna Jona Lasinio & Gianluca Mastrantonio & Alessio Pollice, 2013. "Discussing the “big n problem”," Statistical Methods & Applications, Springer;Società Italiana di Statistica, vol. 22(1), pages 97-112, March.
    7. John O'Sullivan & Conor Sweeney & Andrew C. Parnell, 2020. "Bayesian spatial extreme value analysis of maximum temperatures in County Dublin, Ireland," Environmetrics, John Wiley & Sons, Ltd., vol. 31(5), August.
    8. Peter J. Diggle & Emanuele Giorgi, 2016. "Model-Based Geostatistics for Prevalence Mapping in Low-Resource Settings," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(515), pages 1096-1120, July.
    9. Gael M. Martin & David T. Frazier & Christian P. Robert, 2022. "Computing Bayes: From Then `Til Now," Monash Econometrics and Business Statistics Working Papers 14/22, Monash University, Department of Econometrics and Business Statistics.
    10. Rajala, T. & Penttinen, A., 2014. "Bayesian analysis of a Gibbs hard-core point pattern model with varying repulsion range," Computational Statistics & Data Analysis, Elsevier, vol. 71(C), pages 530-541.
    11. Nikoline N. Knudsen & Jörg Schullehner & Birgitte Hansen & Lisbeth F. Jørgensen & Søren M. Kristiansen & Denitza D. Voutchkova & Thomas A. Gerds & Per K. Andersen & Kristine Bihrmann & Morten Grønbæk , 2017. "Lithium in Drinking Water and Incidence of Suicide: A Nationwide Individual-Level Cohort Study with 22 Years of Follow-Up," IJERPH, MDPI, vol. 14(6), pages 1-13, June.
    12. Leonardo Padilla & Bernado Lagos‐Álvarez & Jorge Mateu & Emilio Porcu, 2020. "Space‐time autoregressive estimation and prediction with missing data based on Kalman filtering," Environmetrics, John Wiley & Sons, Ltd., vol. 31(7), November.
    13. Scott, Ryan P. & Scott, Tyler A., 2019. "Investing in collaboration for safety: Assessing grants to states for oil and gas distribution pipeline safety program enhancement," Energy Policy, Elsevier, vol. 124(C), pages 332-345.
    14. Zhang, Tonglin, 2017. "An example of inconsistent MLE of spatial covariance parameters under increasing domain asymptotics," Statistics & Probability Letters, Elsevier, vol. 120(C), pages 108-113.
    15. Girard, Didier A., 2016. "Asymptotic near-efficiency of the “Gibbs-energy and empirical-variance” estimating functions for fitting Matérn models — I: Densely sampled processes," Statistics & Probability Letters, Elsevier, vol. 110(C), pages 191-197.
    16. Cho, Daegon & Hwang, Youngdeok & Park, Jongwon, 2018. "More buzz, more vibes: Impact of social media on concert distribution," Journal of Economic Behavior & Organization, Elsevier, vol. 156(C), pages 103-113.
    17. Jorge I. Figueroa-Zúñiga & Cristian L. Bayes & Víctor Leiva & Shuangzhe Liu, 2022. "Robust beta regression modeling with errors-in-variables: a Bayesian approach and numerical applications," Statistical Papers, Springer, vol. 63(3), pages 919-942, June.
    18. Brown, Paul T. & Joshi, Chaitanya & Joe, Stephen & Rue, Håvard, 2021. "A novel method of marginalisation using low discrepancy sequences for integrated nested Laplace approximations," Computational Statistics & Data Analysis, Elsevier, vol. 157(C).
    19. Andre Python & Andreas Bender & Marta Blangiardo & Janine B. Illian & Ying Lin & Baoli Liu & Tim C.D. Lucas & Siwei Tan & Yingying Wen & Davit Svanidze & Jianwei Yin, 2022. "A downscaling approach to compare COVID‐19 count data from databases aggregated at different spatial scales," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 185(1), pages 202-218, January.
    20. Michaela Prokešová & Eva Jensen, 2013. "Asymptotic Palm likelihood theory for stationary point processes," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 65(2), pages 387-412, April.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:wly:envmet:v:31:y:2020:i:4:n:e2608. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Wiley Content Delivery (email available below). General contact details of provider: http://www.interscience.wiley.com/jpages/1180-4009/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.