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A Flexible Bayesian Approach to Monotone Missing Data in Longitudinal Studies With Nonignorable Missingness With Application to an Acute Schizophrenia Clinical Trial

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  • Antonio R. Linero
  • Michael J. Daniels

Abstract

We develop a Bayesian nonparametric model for a longitudinal response in the presence of nonignorable missing data. Our general approach is to first specify a working model that flexibly models the missingness and full outcome processes jointly. We specify a Dirichlet process mixture of missing at random (MAR) models as a prior on the joint distribution of the working model. This aspect of the model governs the fit of the observed data by modeling the observed data distribution as the marginalization over the missing data in the working model. We then separately specify the conditional distribution of the missing data given the observed data and dropout. This approach allows us to identify the distribution of the missing data using identifying restrictions as a starting point. We propose a framework for introducing sensitivity parameters, allowing us to vary the untestable assumptions about the missing data mechanism smoothly. Informative priors on the space of missing data assumptions can be specified to combine inferences under many different assumptions into a final inference and accurately characterize uncertainty. These methods are motivated by, and applied to, data from a clinical trial assessing the efficacy of a new treatment for acute schizophrenia. Supplementary materials for this article are available online.

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  • Antonio R. Linero & Michael J. Daniels, 2015. "A Flexible Bayesian Approach to Monotone Missing Data in Longitudinal Studies With Nonignorable Missingness With Application to an Acute Schizophrenia Clinical Trial," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 110(509), pages 45-55, March.
  • Handle: RePEc:taf:jnlasa:v:110:y:2015:i:509:p:45-55
    DOI: 10.1080/01621459.2014.969424
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    7. Michael J. Daniels, 2002. "Bayesian analysis of covariance matrices and dynamic models for longitudinal data," Biometrika, Biometrika Trust, vol. 89(3), pages 553-566, August.
    8. Chenguang Wang & Michael J. Daniels, 2011. "A Note on MAR, Identifying Restrictions, Model Comparison, and Sensitivity Analysis in Pattern Mixture Models with and without Covariates for Incomplete Data," Biometrics, The International Biometric Society, vol. 67(3), pages 810-818, September.
    9. Jolene Birmingham & Andrea Rotnitzky & Garrett M. Fitzmaurice, 2003. "Pattern–mixture and selection models for analysing longitudinal data with monotone missing patterns," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 65(1), pages 275-297, February.
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    Cited by:

    1. Heng Chen & Daniel F. Heitjan, 2022. "Analysis of local sensitivity to nonignorability with missing outcomes and predictors," Biometrics, The International Biometric Society, vol. 78(4), pages 1342-1352, December.
    2. Andrea Gabrio & Michael J. Daniels & Gianluca Baio, 2020. "A Bayesian parametric approach to handle missing longitudinal outcome data in trial‐based health economic evaluations," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 183(2), pages 607-629, February.
    3. Antonio R. Linero, 2022. "Simulation‐based estimators of analytically intractable causal effects," Biometrics, The International Biometric Society, vol. 78(3), pages 1001-1017, September.
    4. Zhang, Yan-Qing & Tang, Nian-Sheng, 2017. "Bayesian local influence analysis of general estimating equations with nonignorable missing data," Computational Statistics & Data Analysis, Elsevier, vol. 105(C), pages 184-200.
    5. Michael J. Daniels & Minji Lee & Wei Feng, 2023. "Dirichlet process mixture models for the analysis of repeated attempt designs," Biometrics, The International Biometric Society, vol. 79(4), pages 3907-3915, December.
    6. A. R. Linero, 2017. "Bayesian nonparametric analysis of longitudinal studies in the presence of informative missingness," Biometrika, Biometrika Trust, vol. 104(2), pages 327-341.
    7. Daniel Scharfstein & Aidan McDermott & Iván Díaz & Marco Carone & Nicola Lunardon & Ibrahim Turkoz, 2018. "Global sensitivity analysis for repeated measures studies with informative drop†out: A semi†parametric approach," Biometrics, The International Biometric Society, vol. 74(1), pages 207-219, March.
    8. Yu Cao & Nitai D. Mukhopadhyay, 2021. "Statistical Modeling of Longitudinal Data with Non-Ignorable Non-Monotone Missingness with Semiparametric Bayesian and Machine Learning Components," Sankhya B: The Indian Journal of Statistics, Springer;Indian Statistical Institute, vol. 83(1), pages 152-169, May.

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