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A mediator of OsbZIP46 deactivation and degradation negatively regulates seed dormancy in rice

Author

Listed:
  • Naihui Guo

    (Ministry of Agriculture/China National Rice Improvement Centre/China National Rice Research Institute
    Rice Research Institute, Shenyang Agricultural University)

  • Shengjia Tang

    (Ministry of Agriculture/China National Rice Improvement Centre/China National Rice Research Institute)

  • Yakun Wang

    (Ministry of Agriculture/China National Rice Improvement Centre/China National Rice Research Institute
    Chinese Academy of Agricultural Sciences)

  • Wei Chen

    (Ministry of Agriculture/China National Rice Improvement Centre/China National Rice Research Institute)

  • Ruihu An

    (Ministry of Agriculture/China National Rice Improvement Centre/China National Rice Research Institute)

  • Zongliang Ren

    (Ministry of Agriculture/China National Rice Improvement Centre/China National Rice Research Institute)

  • Shikai Hu

    (Ministry of Agriculture/China National Rice Improvement Centre/China National Rice Research Institute)

  • Shaoqing Tang

    (Ministry of Agriculture/China National Rice Improvement Centre/China National Rice Research Institute)

  • Xiangjin Wei

    (Ministry of Agriculture/China National Rice Improvement Centre/China National Rice Research Institute)

  • Gaoneng Shao

    (Ministry of Agriculture/China National Rice Improvement Centre/China National Rice Research Institute)

  • Guiai Jiao

    (Ministry of Agriculture/China National Rice Improvement Centre/China National Rice Research Institute)

  • Lihong Xie

    (Ministry of Agriculture/China National Rice Improvement Centre/China National Rice Research Institute)

  • Ling Wang

    (Ministry of Agriculture/China National Rice Improvement Centre/China National Rice Research Institute)

  • Ying Chen

    (Ministry of Agriculture/China National Rice Improvement Centre/China National Rice Research Institute)

  • Fengli Zhao

    (Ministry of Agriculture/China National Rice Improvement Centre/China National Rice Research Institute)

  • Zhonghua Sheng

    (Ministry of Agriculture/China National Rice Improvement Centre/China National Rice Research Institute
    Jiangxi Early-season Rice Research Center)

  • Peisong Hu

    (Ministry of Agriculture/China National Rice Improvement Centre/China National Rice Research Institute
    Rice Research Institute, Shenyang Agricultural University)

Abstract

Preharvest sprouting (PHS) is a deleterious phenotype that occurs frequently in rice-growing regions where the temperature and precipitation are high. It negatively affects yield, quality, and downstream grain processing. Seed dormancy is a trait related to PHS. Longer seed dormancy is preferred for rice production as it can prevent PHS. Here, we map QTLs associated with rice seed dormancy and clone Seed Dormancy 3.1 (SDR3.1) underlying one major QTL. SDR3.1 encodes a mediator of OsbZIP46 deactivation and degradation (MODD). We show that SDR3.1 negatively regulates seed dormancy by inhibiting the transcriptional activity of ABIs. In addition, we reveal two critical amino acids of SDR3.1 that are critical for the differences in seed dormancy between the Xian/indica and Geng/japonica cultivars. Further, SDR3.1 has been artificially selected during rice domestication. We propose a two-line model for the process of rice seed dormancy domestication from wild rice to modern cultivars. We believe the candidate gene and germplasm studied in this study would be beneficial for the genetic improvement of rice seed dormancy.

Suggested Citation

  • Naihui Guo & Shengjia Tang & Yakun Wang & Wei Chen & Ruihu An & Zongliang Ren & Shikai Hu & Shaoqing Tang & Xiangjin Wei & Gaoneng Shao & Guiai Jiao & Lihong Xie & Ling Wang & Ying Chen & Fengli Zhao , 2024. "A mediator of OsbZIP46 deactivation and degradation negatively regulates seed dormancy in rice," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-45402-z
    DOI: 10.1038/s41467-024-45402-z
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    References listed on IDEAS

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    1. Jared Diamond, 2002. "Evolution, consequences and future of plant and animal domestication," Nature, Nature, vol. 418(6898), pages 700-707, August.
    2. Hong Yu & Jiayang Li, 2022. "Breeding future crops to feed the world through de novo domestication," Nature Communications, Nature, vol. 13(1), pages 1-4, December.
    3. Delphine Renard & David Tilman, 2019. "National food production stabilized by crop diversity," Nature, Nature, vol. 571(7764), pages 257-260, July.
    4. Xuehui Huang & Nori Kurata & Xinghua Wei & Zi-Xuan Wang & Ahong Wang & Qiang Zhao & Yan Zhao & Kunyan Liu & Hengyun Lu & Wenjun Li & Yunli Guo & Yiqi Lu & Congcong Zhou & Danlin Fan & Qijun Weng & Chu, 2012. "A map of rice genome variation reveals the origin of cultivated rice," Nature, Nature, vol. 490(7421), pages 497-501, October.
    5. Hideki Yoshida & Ko Hirano & Kenji Yano & Fanmiao Wang & Masaki Mori & Mayuko Kawamura & Eriko Koketsu & Masako Hattori & Reynante Lacsamana Ordonio & Peng Huang & Eiji Yamamoto & Makoto Matsuoka, 2022. "Genome-wide association study identifies a gene responsible for temperature-dependent rice germination," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    6. Chunbo Miao & Zhen Wang & Lin Zhang & Juanjuan Yao & Kai Hua & Xue Liu & Huazhong Shi & Jian-Kang Zhu, 2019. "The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice," Nature Communications, Nature, vol. 10(1), pages 1-12, December.
    7. Michael D. Purugganan & Dorian Q. Fuller, 2009. "The nature of selection during plant domestication," Nature, Nature, vol. 457(7231), pages 843-848, February.
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