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Model-based clustering of high-dimensional data: A review

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  • Bouveyron, Charles
  • Brunet-Saumard, Camille

Abstract

Model-based clustering is a popular tool which is renowned for its probabilistic foundations and its flexibility. However, high-dimensional data are nowadays more and more frequent and, unfortunately, classical model-based clustering techniques show a disappointing behavior in high-dimensional spaces. This is mainly due to the fact that model-based clustering methods are dramatically over-parametrized in this case. However, high-dimensional spaces have specific characteristics which are useful for clustering and recent techniques exploit those characteristics. After having recalled the bases of model-based clustering, dimension reduction approaches, regularization-based techniques, parsimonious modeling, subspace clustering methods and clustering methods based on variable selection are reviewed. Existing softwares for model-based clustering of high-dimensional data will be also reviewed and their practical use will be illustrated on real-world data sets.

Suggested Citation

  • Bouveyron, Charles & Brunet-Saumard, Camille, 2014. "Model-based clustering of high-dimensional data: A review," Computational Statistics & Data Analysis, Elsevier, vol. 71(C), pages 52-78.
  • Handle: RePEc:eee:csdana:v:71:y:2014:i:c:p:52-78
    DOI: 10.1016/j.csda.2012.12.008
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    1. Vrbik, I. & McNicholas, P.D., 2012. "Analytic calculations for the EM algorithm for multivariate skew-t mixture models," Statistics & Probability Letters, Elsevier, vol. 82(6), pages 1169-1174.
    2. Peter Hall & J. S. Marron & Amnon Neeman, 2005. "Geometric representation of high dimension, low sample size data," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(3), pages 427-444, June.
    3. Wei‐Chien Chang, 1983. "On Using Principal Components before Separating a Mixture of Two Multivariate Normal Distributions," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 32(3), pages 267-275, November.
    4. Biernacki, Christophe & Celeux, Gilles & Govaert, Gerard & Langrognet, Florent, 2006. "Model-based cluster and discriminant analysis with the MIXMOD software," Computational Statistics & Data Analysis, Elsevier, vol. 51(2), pages 587-600, November.
    5. von Borries, George & Wang, Haiyan, 2009. "Partition clustering of high dimensional low sample size data based on p-values," Computational Statistics & Data Analysis, Elsevier, vol. 53(12), pages 3987-3998, October.
    6. Lee, Gyemin & Scott, Clayton, 2012. "EM algorithms for multivariate Gaussian mixture models with truncated and censored data," Computational Statistics & Data Analysis, Elsevier, vol. 56(9), pages 2816-2829.
    7. Steiner, P.M. & Hudec, M., 2007. "Classification of large data sets with mixture models via sufficient EM," Computational Statistics & Data Analysis, Elsevier, vol. 51(11), pages 5416-5428, July.
    8. Fionn Murtagh, 2009. "The Remarkable Simplicity of Very High Dimensional Data: Application of Model-Based Clustering," Journal of Classification, Springer;The Classification Society, vol. 26(3), pages 249-277, December.
    9. Nia, Vahid Partovi & Davison, Anthony C., 2012. "High-Dimensional Bayesian Clustering with Variable Selection: The R Package bclust," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 47(i05).
    10. Chris Fraley & Adrian E. Raftery, 1999. "MCLUST: Software for Model-Based Cluster Analysis," Journal of Classification, Springer;The Classification Society, vol. 16(2), pages 297-306, July.
    11. Biernacki, Christophe & Jacques, Julien, 2013. "A generative model for rank data based on insertion sort algorithm," Computational Statistics & Data Analysis, Elsevier, vol. 58(C), pages 162-176.
    12. Galimberti, Giuliano & Montanari, Angela & Viroli, Cinzia, 2009. "Penalized factor mixture analysis for variable selection in clustered data," Computational Statistics & Data Analysis, Elsevier, vol. 53(12), pages 4301-4310, October.
    13. Tritchler, David & Fallah, Shafagh & Beyene, Joseph, 2005. "A spectral clustering method for microarray data," Computational Statistics & Data Analysis, Elsevier, vol. 49(1), pages 63-76, April.
    14. Bouveyron, C. & Girard, S. & Schmid, C., 2007. "High-dimensional data clustering," Computational Statistics & Data Analysis, Elsevier, vol. 52(1), pages 502-519, September.
    15. McLachlan, G. J. & Peel, D. & Bean, R. W., 2003. "Modelling high-dimensional data by mixtures of factor analyzers," Computational Statistics & Data Analysis, Elsevier, vol. 41(3-4), pages 379-388, January.
    16. O’Hagan, Adrian & Murphy, Thomas Brendan & Gormley, Isobel Claire, 2012. "Computational aspects of fitting mixture models via the expectation–maximization algorithm," Computational Statistics & Data Analysis, Elsevier, vol. 56(12), pages 3843-3864.
    17. Bergé, Laurent & Bouveyron, Charles & Girard, Stéphane, 2012. "HDclassif: An R Package for Model-Based Clustering and Discriminant Analysis of High-Dimensional Data," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 46(i06).
    18. Donald Rubin & Dorothy Thayer, 1982. "EM algorithms for ML factor analysis," Psychometrika, Springer;The Psychometric Society, vol. 47(1), pages 69-76, March.
    19. Cathy Maugis & Gilles Celeux & Marie-Laure Martin-Magniette, 2009. "Variable Selection for Clustering with Gaussian Mixture Models," Biometrics, The International Biometric Society, vol. 65(3), pages 701-709, September.
    20. Tran, Thanh N. & Wehrens, Ron & Buydens, Lutgarde M.C., 2006. "KNN-kernel density-based clustering for high-dimensional multivariate data," Computational Statistics & Data Analysis, Elsevier, vol. 51(2), pages 513-525, November.
    21. Sijian Wang & Ji Zhu, 2008. "Variable Selection for Model-Based High-Dimensional Clustering and Its Application to Microarray Data," Biometrics, The International Biometric Society, vol. 64(2), pages 440-448, June.
    22. Manolopoulou, Ioanna & Kepler, Thomas B. & Merl, Daniel M., 2012. "Mixtures of Gaussian wells: Theory, computation, and application," Computational Statistics & Data Analysis, Elsevier, vol. 56(12), pages 3809-3820.
    23. Raftery, Adrian E. & Dean, Nema, 2006. "Variable Selection for Model-Based Clustering," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 168-178, March.
    24. Maugis, C. & Celeux, G. & Martin-Magniette, M.-L., 2009. "Variable selection in model-based clustering: A general variable role modeling," Computational Statistics & Data Analysis, Elsevier, vol. 53(11), pages 3872-3882, September.
    25. Melnykov, Volodymyr & Melnykov, Igor, 2012. "Initializing the EM algorithm in Gaussian mixture models with an unknown number of components," Computational Statistics & Data Analysis, Elsevier, vol. 56(6), pages 1381-1395.
    26. Bouveyron, Charles & Brunet, Camille, 2012. "Theoretical and practical considerations on the convergence properties of the Fisher-EM algorithm," Journal of Multivariate Analysis, Elsevier, vol. 109(C), pages 29-41.
    27. Witten, Daniela M. & Tibshirani, Robert, 2010. "A Framework for Feature Selection in Clustering," Journal of the American Statistical Association, American Statistical Association, vol. 105(490), pages 713-726.
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