IDEAS home Printed from https://ideas.repec.org/a/eee/csdana/v53y2009i12p4301-4310.html
   My bibliography  Save this article

Penalized factor mixture analysis for variable selection in clustered data

Author

Listed:
  • Galimberti, Giuliano
  • Montanari, Angela
  • Viroli, Cinzia

Abstract

A model-based clustering approach which contextually performs dimension reduction and variable selection is presented. Dimension reduction is achieved by assuming that the data have been generated by a linear factor model with latent variables modeled as Gaussian mixtures. Variable selection is performed by shrinking the factor loadings though a penalized likelihood method with an L1 penalty. A maximum likelihood estimation procedure via the EM algorithm is developed and a modified BIC criterion to select the penalization parameter is illustrated. The effectiveness of the proposed model is explored in a Monte Carlo simulation study and in a real example.

Suggested Citation

  • Galimberti, Giuliano & Montanari, Angela & Viroli, Cinzia, 2009. "Penalized factor mixture analysis for variable selection in clustered data," Computational Statistics & Data Analysis, Elsevier, vol. 53(12), pages 4301-4310, October.
  • Handle: RePEc:eee:csdana:v:53:y:2009:i:12:p:4301-4310
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0167-9473(09)00222-9
    Download Restriction: Full text for ScienceDirect subscribers only.
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Peter D. Hoff, 2005. "Subset Clustering of Binary Sequences, with an Application to Genomic Abnormality Data," Biometrics, The International Biometric Society, vol. 61(4), pages 1027-1036, December.
    2. Chris Fraley & Adrian E. Raftery, 2003. "Enhanced Model-Based Clustering, Density Estimation, and Discriminant Analysis Software: MCLUST," Journal of Classification, Springer;The Classification Society, vol. 20(2), pages 263-286, September.
    3. Chris Fraley & Adrian E. Raftery, 1999. "MCLUST: Software for Model-Based Cluster Analysis," Journal of Classification, Springer;The Classification Society, vol. 16(2), pages 297-306, July.
    4. Fan J. & Li R., 2001. "Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 1348-1360, December.
    5. Fraley C. & Raftery A.E., 2002. "Model-Based Clustering, Discriminant Analysis, and Density Estimation," Journal of the American Statistical Association, American Statistical Association, vol. 97, pages 611-631, June.
    6. Lawrence Hubert & Phipps Arabie, 1985. "Comparing partitions," Journal of Classification, Springer;The Classification Society, vol. 2(1), pages 193-218, December.
    7. McLachlan, G. J. & Peel, D. & Bean, R. W., 2003. "Modelling high-dimensional data by mixtures of factor analyzers," Computational Statistics & Data Analysis, Elsevier, vol. 41(3-4), pages 379-388, January.
    8. Raftery, Adrian E. & Dean, Nema, 2006. "Variable Selection for Model-Based Clustering," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 168-178, March.
    9. Khalili, Abbas & Chen, Jiahua, 2007. "Variable Selection in Finite Mixture of Regression Models," Journal of the American Statistical Association, American Statistical Association, vol. 102, pages 1025-1038, September.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Gilles Celeux & Cathy Maugis-Rabusseau & Mohammed Sedki, 2019. "Variable selection in model-based clustering and discriminant analysis with a regularization approach," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 13(1), pages 259-278, March.
    2. Bouveyron, Charles & Brunet-Saumard, Camille, 2014. "Model-based clustering of high-dimensional data: A review," Computational Statistics & Data Analysis, Elsevier, vol. 71(C), pages 52-78.
    3. Paul D. McNicholas, 2016. "Model-Based Clustering," Journal of Classification, Springer;The Classification Society, vol. 33(3), pages 331-373, October.
    4. Ahonen, Ilmari & Nevalainen, Jaakko & Larocque, Denis, 2019. "Prediction with a flexible finite mixture-of-regressions," Computational Statistics & Data Analysis, Elsevier, vol. 132(C), pages 212-224.
    5. Ouysse, Rachida & Kohn, Robert, 2010. "Bayesian variable selection and model averaging in the arbitrage pricing theory model," Computational Statistics & Data Analysis, Elsevier, vol. 54(12), pages 3249-3268, December.
    6. Charles Bouveyron & Camille Brunet-Saumard, 2014. "Discriminative variable selection for clustering with the sparse Fisher-EM algorithm," Computational Statistics, Springer, vol. 29(3), pages 489-513, June.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Andrews, Jeffrey L. & McNicholas, Paul D. & Subedi, Sanjeena, 2011. "Model-based classification via mixtures of multivariate t-distributions," Computational Statistics & Data Analysis, Elsevier, vol. 55(1), pages 520-529, January.
    2. repec:jss:jstsof:18:i06 is not listed on IDEAS
    3. McNicholas, P.D. & Murphy, T.B. & McDaid, A.F. & Frost, D., 2010. "Serial and parallel implementations of model-based clustering via parsimonious Gaussian mixture models," Computational Statistics & Data Analysis, Elsevier, vol. 54(3), pages 711-723, March.
    4. Jeffrey Andrews & Paul McNicholas, 2014. "Variable Selection for Clustering and Classification," Journal of Classification, Springer;The Classification Society, vol. 31(2), pages 136-153, July.
    5. Alessandro Casa & Andrea Cappozzo & Michael Fop, 2022. "Group-Wise Shrinkage Estimation in Penalized Model-Based Clustering," Journal of Classification, Springer;The Classification Society, vol. 39(3), pages 648-674, November.
    6. Montanari, Angela & Viroli, Cinzia, 2011. "Maximum likelihood estimation of mixtures of factor analyzers," Computational Statistics & Data Analysis, Elsevier, vol. 55(9), pages 2712-2723, September.
    7. Sakyajit Bhattacharya & Paul McNicholas, 2014. "A LASSO-penalized BIC for mixture model selection," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 8(1), pages 45-61, March.
    8. Bouveyron, C. & Girard, S. & Schmid, C., 2007. "High-dimensional data clustering," Computational Statistics & Data Analysis, Elsevier, vol. 52(1), pages 502-519, September.
    9. Morris, Katherine & McNicholas, Paul D., 2016. "Clustering, classification, discriminant analysis, and dimension reduction via generalized hyperbolic mixtures," Computational Statistics & Data Analysis, Elsevier, vol. 97(C), pages 133-150.
    10. Carlo Cavicchia & Maurizio Vichi & Giorgia Zaccaria, 2022. "Gaussian mixture model with an extended ultrametric covariance structure," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 16(2), pages 399-427, June.
    11. Alex Sharp & Glen Chalatov & Ryan P. Browne, 2023. "A dual subspace parsimonious mixture of matrix normal distributions," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 17(3), pages 801-822, September.
    12. Coffey, N. & Hinde, J. & Holian, E., 2014. "Clustering longitudinal profiles using P-splines and mixed effects models applied to time-course gene expression data," Computational Statistics & Data Analysis, Elsevier, vol. 71(C), pages 14-29.
    13. Wang, Wan-Lun, 2013. "Mixtures of common factor analyzers for high-dimensional data with missing information," Journal of Multivariate Analysis, Elsevier, vol. 117(C), pages 120-133.
    14. Cinzia Viroli, 2010. "Dimensionally Reduced Model-Based Clustering Through Mixtures of Factor Mixture Analyzers," Journal of Classification, Springer;The Classification Society, vol. 27(3), pages 363-388, November.
    15. Fraley, Chris & Raftery, Adrian, 2007. "Model-based Methods of Classification: Using the mclust Software in Chemometrics," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 18(i06).
    16. Mayra Z Rodriguez & Cesar H Comin & Dalcimar Casanova & Odemir M Bruno & Diego R Amancio & Luciano da F Costa & Francisco A Rodrigues, 2019. "Clustering algorithms: A comparative approach," PLOS ONE, Public Library of Science, vol. 14(1), pages 1-34, January.
    17. Bouveyron, Charles & Brunet-Saumard, Camille, 2014. "Model-based clustering of high-dimensional data: A review," Computational Statistics & Data Analysis, Elsevier, vol. 71(C), pages 52-78.
    18. Chao Huang & Martin Styner & Hongtu Zhu, 2015. "Clustering High-Dimensional Landmark-Based Two-Dimensional Shape Data," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 110(511), pages 946-961, September.
    19. Katherine Morris & Paul McNicholas & Luca Scrucca, 2013. "Dimension reduction for model-based clustering via mixtures of multivariate $$t$$ t -distributions," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 7(3), pages 321-338, September.
    20. Morris, Katherine & McNicholas, Paul D., 2013. "Dimension reduction for model-based clustering via mixtures of shifted asymmetric Laplace distributions," Statistics & Probability Letters, Elsevier, vol. 83(9), pages 2088-2093.
    21. Jerzy Korzeniewski, 2016. "New Method Of Variable Selection For Binary Data Cluster Analysis," Statistics in Transition New Series, Polish Statistical Association, vol. 17(2), pages 295-304, June.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:csdana:v:53:y:2009:i:12:p:4301-4310. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.elsevier.com/locate/csda .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.