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REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

Citations

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Cited by:

  1. Alexander Platzer & Thomas Nussbaumer & Thomas Karonitsch & Josef S Smolen & Daniel Aletaha, 2019. "Analysis of gene expression in rheumatoid arthritis and related conditions offers insights into sex-bias, gene biotypes and co-expression patterns," PLOS ONE, Public Library of Science, vol. 14(7), pages 1-23, July.
  2. Yinghui Li & Mei He & Wenshan Zhang & Wei Liu & Hui Xu & Ming Yang & Hexiao Zhang & Haiwei Liang & Wenjing Li & Zhaozhao Wu & Weichao Fu & Shiqi Xu & Xiaolei Liu & Sibin Fan & Liwei Zhou & Chaoqun Wan, 2023. "Expansion of human megakaryocyte-biased hematopoietic stem cells by biomimetic Microniche," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
  3. Zimai Li & Bhoomika Bhat & Erik T. Frank & Thalita Oliveira-Honorato & Fumika Azuma & Valérie Bachmann & Darren J. Parker & Thomas Schmitt & Evan P. Economo & Yuko Ulrich, 2023. "Behavioural individuality determines infection risk in clonal ant colonies," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
  4. Birgit Stallmeyer & Clara Bühlmann & Rytis Stakaitis & Ann-Kristin Dicke & Farah Ghieh & Luisa Meier & Ansgar Zoch & David MacKenzie MacLeod & Johanna Steingröver & Özlem Okutman & Daniela Fietz & Adr, 2024. "Inherited defects of piRNA biogenesis cause transposon de-repression, impaired spermatogenesis, and human male infertility," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
  5. Ritobrata Ghose & Fabio Pezzano & Rémi Badia & Savvas Kourtis & Ilir Sheraj & Shubhamay Das & Antoni Gañez Zapater & Upamanyu Ghose & Sara Musa-Afaneh & Lorena Espinar & Albert Coll-Manzano & Katja Pa, 2025. "Mitochondria-derived nuclear ATP surge protects against confinement-induced proliferation defects," Nature Communications, Nature, vol. 16(1), pages 1-23, December.
  6. Laetitia A. Hughes & Danielle L. Rudler & Stefan J. Siira & Tim McCubbin & Samuel A. Raven & Jasmin M. Browne & Judith A. Ermer & Jeanette Rientjes & Jennifer Rodger & Esteban Marcellin & Oliver Rackh, 2023. "Copy number variation in tRNA isodecoder genes impairs mammalian development and balanced translation," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
  7. Akul Singhania & Hitasha Rupani & Nivenka Jayasekera & Simon Lumb & Paul Hales & Neil Gozzard & Donna E Davies & Christopher H Woelk & Peter H Howarth, 2017. "Altered Epithelial Gene Expression in Peripheral Airways of Severe Asthma," PLOS ONE, Public Library of Science, vol. 12(1), pages 1-16, January.
  8. Aarón Ayllón-Benítez & Fleur Mougin & Julien Allali & Rodolphe Thiébaut & Patricia Thébault, 2018. "A new method for evaluating the impacts of semantic similarity measures on the annotation of gene sets," PLOS ONE, Public Library of Science, vol. 13(11), pages 1-22, November.
  9. Andrea Ode & Georg N Duda & Sven Geissler & Stephan Pauly & Jan-Erik Ode & Carsten Perka & Patrick Strube, 2014. "Interaction of Age and Mechanical Stability on Bone Defect Healing: An Early Transcriptional Analysis of Fracture Hematoma in Rat," PLOS ONE, Public Library of Science, vol. 9(9), pages 1-11, September.
  10. Logan Brase & Shih-Feng You & Ricardo D’Oliveira Albanus & Jorge L. Del-Aguila & Yaoyi Dai & Brenna C. Novotny & Carolina Soriano-Tarraga & Taitea Dykstra & Maria Victoria Fernandez & John P. Budde & , 2023. "Single-nucleus RNA-sequencing of autosomal dominant Alzheimer disease and risk variant carriers," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
  11. Ravneet Jaura & Ssu-Yu Yeh & Kaitlin N. Montanera & Alyssa Ialongo & Zobia Anwar & Yiming Lu & Kavindu Puwakdandawa & Ho Sung Rhee, 2022. "Extended intergenic DNA contributes to neuron-specific expression of neighboring genes in the mammalian nervous system," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
  12. Pau Balart-García & Leandro Aristide & Tessa M. Bradford & Perry G. Beasley-Hall & Slavko Polak & Steven J. B. Cooper & Rosa Fernández, 2023. "Parallel and convergent genomic changes underlie independent subterranean colonization across beetles," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
  13. Matt Fillingim & Christophe Tanguay-Sabourin & Marc Parisien & Azin Zare & Gianluca V. Guglietti & Jax Norman & Bogdan Petre & Andrey Bortsov & Mark Ware & Jordi Perez & Mathieu Roy & Luda Diatchenko , 2025. "Biological markers and psychosocial factors predict chronic pain conditions," Nature Human Behaviour, Nature, vol. 9(8), pages 1710-1725, August.
  14. Stephan Breimann & Frits Kamp & Gabriele Basset & Claudia Abou-Ajram & Gökhan Güner & Kanta Yanagida & Masayasu Okochi & Stephan A. Müller & Stefan F. Lichtenthaler & Dieter Langosch & Dmitrij Frishma, 2025. "Charting γ-secretase substrates by explainable AI," Nature Communications, Nature, vol. 16(1), pages 1-20, December.
  15. Monika Graf & Marta Interlandi & Natalia Moreno & Dörthe Holdhof & Carolin Göbel & Viktoria Melcher & Julius Mertins & Thomas K. Albert & Dennis Kastrati & Amelie Alfert & Till Holsten & Flavia de Far, 2022. "Single-cell transcriptomics identifies potential cells of origin of MYC rhabdoid tumors," Nature Communications, Nature, vol. 13(1), pages 1-19, December.
  16. Jennifer T. Wolstenholme & Justin M. Saunders & Maren Smith & Jason D. Kang & Phillip B. Hylemon & Javier González-Maeso & Andrew Fagan & Derrick Zhao & Masoumeh Sikaroodi & Jeremy Herzog & Amirhossei, 2022. "Reduced alcohol preference and intake after fecal transplant in patients with alcohol use disorder is transmissible to germ-free mice," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
  17. Matthew I. M. Louder & Hannah Justen & Abigail A. Kimmitt & Koedi S. Lawley & Leslie M. Turner & J. David Dickman & Kira E. Delmore, 2024. "Gene regulation and speciation in a migratory divide between songbirds," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
  18. Elio L Herzog & Melania Wäfler & Irene Keller & Sebastian Wolf & Martin S Zinkernagel & Denise C Zysset-Burri, 2021. "The importance of age in compositional and functional profiling of the human intestinal microbiome," PLOS ONE, Public Library of Science, vol. 16(10), pages 1-13, October.
  19. Kristina M. Garske & Asha Kar & Caroline Comenho & Brunilda Balliu & David Z. Pan & Yash V. Bhagat & Gregory Rosenberg & Amogha Koka & Sankha Subhra Das & Zong Miao & Janet S. Sinsheimer & Jaakko Kapr, 2023. "Increased body mass index is linked to systemic inflammation through altered chromatin co-accessibility in human preadipocytes," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
  20. Mathew Pette & Andrew Dimond & António M. Galvão & Steven J. Millership & Wilson To & Chiara Prodani & Gráinne McNamara & Ludovica Bruno & Alessandro Sardini & Zoe Webster & James McGinty & Paul M. W., 2022. "Epigenetic changes induced by in utero dietary challenge result in phenotypic variability in successive generations of mice," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
  21. Young-Jun Choi & Bruce A. Rosa & Martha V. Fernandez-Baca & Rodrigo A. Ore & John Martin & Pedro Ortiz & Cristian Hoban & Miguel M. Cabada & Makedonka Mitreva, 2025. "Independent origins and non-parallel selection signatures of triclabendazole resistance in Fasciola hepatica," Nature Communications, Nature, vol. 16(1), pages 1-15, December.
  22. Sara C. Pinto & Weng Herng Leong & Hweiting Tan & Lauren McKee & Amelie Prevost & Chao Ma & Neil. J. Shirley & Rosanna Petrella & Xiujuan Yang & Anna M. Koltunow & Vincent Bulone & Masahiro M. Kanaoka, 2024. "Germline β−1,3-glucan deposits are required for female gametogenesis in Arabidopsis thaliana," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
  23. Yasuhiro Sato & Rie Shimizu-Inatsugi & Kazuya Takeda & Bernhard Schmid & Atsushi J. Nagano & Kentaro K. Shimizu, 2024. "Reducing herbivory in mixed planting by genomic prediction of neighbor effects in the field," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
  24. Simonetta M. Leto & Elena Grassi & Marco Avolio & Valentina Vurchio & Francesca Cottino & Martina Ferri & Eugenia R. Zanella & Sofia Borgato & Giorgio Corti & Laura Blasio & Desiana Somale & Marianela, 2024. "XENTURION is a population-level multidimensional resource of xenografts and tumoroids from metastatic colorectal cancer patients," Nature Communications, Nature, vol. 15(1), pages 1-22, December.
  25. Murilo Sena Amaral & Daisy Woellner Santos & Adriana S. A. Pereira & Ana Carolina Tahira & João V. M. Malvezzi & Patrícia Aoki Miyasato & Rafaela de Paula Freitas & Jorge Kalil & Elisa M. Tjon Kon Fat, 2021. "Rhesus macaques self-curing from a schistosome infection can display complete immunity to challenge," Nature Communications, Nature, vol. 12(1), pages 1-17, December.
  26. Angeles Arzalluz-Luque & Pedro Salguero & Sonia Tarazona & Ana Conesa, 2022. "acorde unravels functionally interpretable networks of isoform co-usage from single cell data," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
  27. Hyun Jae Lee & Marcela L. Moreira & Shihan Li & Takahiro Asatsuma & Cameron G. Williams & Oliver P. Skinner & Saba Asad & Michael Bramhall & Zhe Jiang & Zihan Liu & Ashlyn S. Kerr & Jessica A. Engel &, 2024. "CD4+ T cells display a spectrum of recall dynamics during re-infection with malaria parasites," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
  28. Benjamin J. Jenkins & Yasmin R. Jenkins & Fernando M. Ponce-Garcia & Chloe Moscrop & Iain A. Perry & Matthew D. Hitchings & Alejandro H. Uribe & Federico Bernuzzi & Simon Eastham & James G. Cronin & A, 2025. "Mitochondrial ABHD11 inhibition drives sterol metabolism to modulate T-cell effector function," Nature Communications, Nature, vol. 16(1), pages 1-18, December.
  29. Rachel A. Steward & Maaike A. de Jong & Vicencio Oostra & Christopher W. Wheat, 2022. "Alternative splicing in seasonal plasticity and the potential for adaptation to environmental change," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
  30. Byeonghwi Lim & Seung-Chai Kim & Hwan-Ju Kim & Jae-Hwan Kim & Young-Jun Seo & Chiwoong Lim & Yejee Park & Sunirmal Sheet & Dahye Kim & Do-Hwan Lim & Kyeongsoon Park & Kyung-Tai Lee & Won-Il Kim & Jun-, 2025. "Single-cell transcriptomics of bronchoalveolar lavage during PRRSV infection with different virulence," Nature Communications, Nature, vol. 16(1), pages 1-22, December.
  31. Scott C Ritchie & Johannes Kettunen & Marta Brozynska & Artika P Nath & Aki S Havulinna & Satu Männistö & Markus Perola & Veikko Salomaa & Mika Ala-Korpela & Gad Abraham & Peter Würtz & Michael Inouye, 2019. "Elevated serum alpha-1 antitrypsin is a major component of GlycA-associated risk for future morbidity and mortality," PLOS ONE, Public Library of Science, vol. 14(10), pages 1-23, October.
  32. Mihaela Pavličev & Caitlin E. McDonough-Goldstein & Andreja Moset Zupan & Lisa Muglia & Yueh-Chiang Hu & Fansheng Kong & Nagendra Monangi & Gülay Dagdas & Nina Zupančič & Jamie Maziarz & Debora Sinner, 2024. "A common allele increases endometrial Wnt4 expression, with antagonistic implications for pregnancy, reproductive cancers, and endometriosis," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
  33. Emre Caglayan & Genevieve Konopka, 2025. "Decoding DNA sequence-driven evolution of the human brain epigenome at cellular resolution," Nature Communications, Nature, vol. 16(1), pages 1-12, December.
  34. Florian Constanty & Bailin Wu & Ke-Hsuan Wei & I-Ting Lin & Julia Dallmann & Stefan Guenther & Till Lautenschlaeger & Rashmi Priya & Shih-Lei Lai & Didier Y. R. Stainier & Arica Beisaw, 2025. "Border-zone cardiomyocytes and macrophages regulate extracellular matrix remodeling to promote cardiomyocyte protrusion during cardiac regeneration," Nature Communications, Nature, vol. 16(1), pages 1-25, December.
  35. repec:plo:pone00:0177058 is not listed on IDEAS
  36. Marti Quevedo & Ivona Kubalová & Alexis Brun & Luis Cervela-Cardona & Elena Monte & Åsa Strand, 2025. "Retrograde signals control dynamic changes to the chromatin state at photosynthesis-associated loci," Nature Communications, Nature, vol. 16(1), pages 1-15, December.
  37. Ru Chen & Aiko Sugiyama & Hiroshi Seno & Masahiro Sugimoto, 2019. "Identification of modules and functional analysis in CRC subtypes by integrated bioinformatics analysis," PLOS ONE, Public Library of Science, vol. 14(8), pages 1-16, August.
  38. Linsan Liu & Sarah B. Jose & Chiara Campoli & Micha M. Bayer & Miguel A. Sánchez-Diaz & Trisha McAllister & Yichun Zhou & Mhmoud Eskan & Linda Milne & Miriam Schreiber & Thomas Batstone & Ian D. Bull , 2022. "Conserved signalling components coordinate epidermal patterning and cuticle deposition in barley," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
  39. G. S. I. Hattich & S. Jokinen & S. Sildever & M. Gareis & J. Heikkinen & N. Junghardt & M. Segovia & M. Machado & C. Sjöqvist, 2024. "Temperature optima of a natural diatom population increases as global warming proceeds," Nature Climate Change, Nature, vol. 14(5), pages 518-525, May.
  40. José Cerca & Bent Petersen & José Miguel Lazaro-Guevara & Angel Rivera-Colón & Siri Birkeland & Joel Vizueta & Siyu Li & Qionghou Li & João Loureiro & Chatchai Kosawang & Patricia Jaramillo Díaz & Gon, 2022. "The genomic basis of the plant island syndrome in Darwin’s giant daisies," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
  41. Maria C. Virgilio & Barkha Ramnani & Thomas Chen & W. Miguel Disbennett & Jay Lubow & Joshua D. Welch & Kathleen L. Collins, 2024. "HIV-1 Vpr combats the PU.1-driven antiviral response in primary human macrophages," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
  42. Fabio Alfieri & Giulio Caravagna & Martin H. Schaefer, 2023. "Cancer genomes tolerate deleterious coding mutations through somatic copy number amplifications of wild-type regions," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
  43. Miguel Rodriguez de los Santos & Brian H. Kopell & Ariela Buxbaum Grice & Gauri Ganesh & Andy Yang & Pardis Amini & Lora E. Liharska & Eric Vornholt & John F. Fullard & Pengfei Dong & Eric Park & Sara, 2024. "Divergent landscapes of A-to-I editing in postmortem and living human brain," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
  44. David R. Ghasemi & Konstantin Okonechnikov & Anne Rademacher & Stephan Tirier & Kendra K. Maass & Hanna Schumacher & Piyush Joshi & Maxwell P. Gold & Julia Sundheimer & Britta Statz & Ahmet S. Rifaiog, 2024. "Compartments in medulloblastoma with extensive nodularity are connected through differentiation along the granular precursor lineage," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
  45. Sara Della Torre & Valeria Benedusi & Giovanna Pepe & Clara Meda & Nicoletta Rizzi & Nina Henriette Uhlenhaut & Adriana Maggi, 2021. "Dietary essential amino acids restore liver metabolism in ovariectomized mice via hepatic estrogen receptor α," Nature Communications, Nature, vol. 12(1), pages 1-13, December.
  46. M. Hafiz Rothi & Gautam Chandra Sarkar & Joseph Al Haddad & Wayne Mitchell & Kejun Ying & Nancy Pohl & Roberto G. Sotomayor-Mena & Julia Natale & Scarlett Dellacona & Vadim N. Gladyshev & Eric Lieberm, 2025. "The 18S rRNA methyltransferase DIMT-1 regulates lifespan in the germline later in life," Nature Communications, Nature, vol. 16(1), pages 1-13, December.
  47. Yuki Furuta & Haruka Yamamoto & Takeshi Hirakawa & Akira Uemura & Margaret Anne Pelayo & Hideaki Iimura & Naoya Katagiri & Noriko Takeda-Kamiya & Kie Kumaishi & Makoto Shirakawa & Sumie Ishiguro & Yas, 2024. "Petal abscission is promoted by jasmonic acid-induced autophagy at Arabidopsis petal bases," Nature Communications, Nature, vol. 15(1), pages 1-24, December.
  48. Yuki Matsushita & Jialin Liu & Angel Ka Yan Chu & Chiaki Tsutsumi-Arai & Mizuki Nagata & Yuki Arai & Wanida Ono & Kouhei Yamamoto & Thomas L. Saunders & Joshua D. Welch & Noriaki Ono, 2023. "Bone marrow endosteal stem cells dictate active osteogenesis and aggressive tumorigenesis," Nature Communications, Nature, vol. 14(1), pages 1-23, December.
  49. Lina Liu & Ana Vujovic & Nandan P. Deshpande & Shashank Sathe & Govardhan Anande & He Tian Tony Chen & Joshua Xu & Mark D. Minden & Gene W. Yeo & Ashwin Unnikrishnan & Kristin J. Hope & Yu Lu, 2022. "The splicing factor RBM17 drives leukemic stem cell maintenance by evading nonsense-mediated decay of pro-leukemic factors," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
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