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A Genealogical Interpretation of Principal Components Analysis

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Cited by:

  1. Oscar Lao & Fan Liu & Andreas Wollstein & Manfred Kayser, 2014. "GAGA: A New Algorithm for Genomic Inference of Geographic Ancestry Reveals Fine Level Population Substructure in Europeans," PLOS Computational Biology, Public Library of Science, vol. 10(2), pages 1-11, February.
  2. Thomas L. Schmidt & Nancy M. Endersby-Harshman & Anthony R. J. Rooyen & Michelle Katusele & Rebecca Vinit & Leanne J. Robinson & Moses Laman & Stephan Karl & Ary A. Hoffmann, 2024. "Global, asynchronous partial sweeps at multiple insecticide resistance genes in Aedes mosquitoes," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
  3. Jason Sawler & Bruce Reisch & Mallikarjuna K Aradhya & Bernard Prins & Gan-Yuan Zhong & Heidi Schwaninger & Charles Simon & Edward Buckler & Sean Myles, 2013. "Genomics Assisted Ancestry Deconvolution in Grape," PLOS ONE, Public Library of Science, vol. 8(11), pages 1-1, November.
  4. Duforet-Frebourg, Nicolas & Slatkin, Montgomery, 2016. "Isolation-by-distance-and-time in a stepping-stone model," Theoretical Population Biology, Elsevier, vol. 108(C), pages 24-35.
  5. Estavoyer, Maxime & François, Olivier, 2022. "Theoretical analysis of principal components in an umbrella model of intraspecific evolution," Theoretical Population Biology, Elsevier, vol. 148(C), pages 11-21.
  6. Yaoling Yang & Richard Durbin & Astrid K. N. Iversen & Daniel J. Lawson, 2025. "Sparse haplotype-based fine-scale local ancestry inference at scale reveals recent selection on immune responses," Nature Communications, Nature, vol. 16(1), pages 1-17, December.
  7. Daniel John Lawson & Garrett Hellenthal & Simon Myers & Daniel Falush, 2012. "Inference of Population Structure using Dense Haplotype Data," PLOS Genetics, Public Library of Science, vol. 8(1), pages 1-16, January.
  8. Hugh G Gauch Jr. & Sheng Qian & Hans-Peter Piepho & Linda Zhou & Rui Chen, 2019. "Consequences of PCA graphs, SNP codings, and PCA variants for elucidating population structure," PLOS ONE, Public Library of Science, vol. 14(6), pages 1-26, June.
  9. Jianzhong Ma & Christopher I Amos, 2012. "Principal Components Analysis of Population Admixture," PLOS ONE, Public Library of Science, vol. 7(7), pages 1-12, July.
  10. Zheng, Xiuwen & Weir, Bruce S., 2016. "Eigenanalysis of SNP data with an identity by descent interpretation," Theoretical Population Biology, Elsevier, vol. 107(C), pages 65-76.
  11. Priya Moorjani & Nick Patterson & Joel N Hirschhorn & Alon Keinan & Li Hao & Gil Atzmon & Edward Burns & Harry Ostrer & Alkes L Price & David Reich, 2011. "The History of African Gene Flow into Southern Europeans, Levantines, and Jews," PLOS Genetics, Public Library of Science, vol. 7(4), pages 1-13, April.
  12. Alexander Köhler & Marvin Kahra & Michael Breuß, 2024. "A First Approach to Quantum Logical Shape Classification Framework," Mathematics, MDPI, vol. 12(11), pages 1-21, May.
  13. Alexander Dilthey & Stephen Leslie & Loukas Moutsianas & Judong Shen & Charles Cox & Matthew R Nelson & Gil McVean, 2013. "Multi-Population Classical HLA Type Imputation," PLOS Computational Biology, Public Library of Science, vol. 9(2), pages 1-13, February.
  14. Ralph, Peter L., 2019. "An empirical approach to demographic inference with genomic data," Theoretical Population Biology, Elsevier, vol. 127(C), pages 91-101.
  15. repec:plo:pone00:0075707 is not listed on IDEAS
  16. Yedael Y Waldman & Arjun Biddanda & Natalie R Davidson & Paul Billing-Ross & Maya Dubrovsky & Christopher L Campbell & Carole Oddoux & Eitan Friedman & Gil Atzmon & Eran Halperin & Harry Ostrer & Alon, 2016. "The Genetics of Bene Israel from India Reveals Both Substantial Jewish and Indian Ancestry," PLOS ONE, Public Library of Science, vol. 11(3), pages 1-28, March.
  17. Peña-Malavera Andrea & Bruno Cecilia & Fernandez Elmer & Balzarini Monica, 2014. "Comparison of algorithms to infer genetic population structure from unlinked molecular markers," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 13(4), pages 391-402, August.
  18. Wang Chaolong & Szpiech Zachary A & Degnan James H & Jakobsson Mattias & Pemberton Trevor J & Hardy John A & Singleton Andrew B & Rosenberg Noah A, 2010. "Comparing Spatial Maps of Human Population-Genetic Variation Using Procrustes Analysis," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 9(1), pages 1-22, January.
  19. Marie Louis & Petra Korlević & Milaja Nykänen & Frederick Archer & Simon Berrow & Andrew Brownlow & Eline D. Lorenzen & Joanne O’Brien & Klaas Post & Fernando Racimo & Emer Rogan & Patricia E. Rosel &, 2023. "Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
  20. Xiaojun Mao & Somak Dutta & Raymond K. W. Wong & Dan Nettleton, 2020. "Adjusting for Spatial Effects in Genomic Prediction," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 25(4), pages 699-718, December.
  21. Luca Cornetti & Peter D. Fields & Louis Du Pasquier & Dieter Ebert, 2024. "Long-term balancing selection for pathogen resistance maintains trans-species polymorphisms in a planktonic crustacean," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
  22. Zhaoming Wang & Allan Hildesheim & Sophia S Wang & Rolando Herrero & Paula Gonzalez & Laurie Burdette & Amy Hutchinson & Gilles Thomas & Stephen J Chanock & Kai Yu, 2010. "Genetic Admixture and Population Substructure in Guanacaste Costa Rica," PLOS ONE, Public Library of Science, vol. 5(10), pages 1-10, October.
  23. Mofokeng, Maletsema Alina & Mashingaidze, Kingstone, 2018. "Genetic Differentiation of ARC Soybean [Glycine Max (L.) Merrill] Accessions Based on Agronomic and Nutritional Quality Traits," Agriculture and Food Sciences Research, Asian Online Journal Publishing Group, vol. 5(1), pages 6-22.
  24. Buschbom, Jutta, 2018. "Exploring and validating statistical reliability in forensic conservation genetics," Thünen Reports 63, Johann Heinrich von Thünen Institute, Federal Research Institute for Rural Areas, Forestry and Fisheries.
  25. Gavin Band & Quang Si Le & Luke Jostins & Matti Pirinen & Katja Kivinen & Muminatou Jallow & Fatoumatta Sisay-Joof & Kalifa Bojang & Margaret Pinder & Giorgio Sirugo & David J Conway & Vysaul Nyirongo, 2013. "Imputation-Based Meta-Analysis of Severe Malaria in Three African Populations," PLOS Genetics, Public Library of Science, vol. 9(5), pages 1-13, May.
  26. Pei-Kuan Cong & Wei-Yang Bai & Jin-Chen Li & Meng-Yuan Yang & Saber Khederzadeh & Si-Rui Gai & Nan Li & Yu-Heng Liu & Shi-Hui Yu & Wei-Wei Zhao & Jun-Quan Liu & Yi Sun & Xiao-Wei Zhu & Pian-Pian Zhao , 2022. "Genomic analyses of 10,376 individuals in the Westlake BioBank for Chinese (WBBC) pilot project," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
  27. Bryc, Katarzyna & Bryc, Wlodek & Silverstein, Jack W., 2013. "Separation of the largest eigenvalues in eigenanalysis of genotype data from discrete subpopulations," Theoretical Population Biology, Elsevier, vol. 89(C), pages 34-43.
  28. Julia Gimbernat-Mayol & Albert Dominguez Mantes & Carlos D Bustamante & Daniel Mas Montserrat & Alexander G Ioannidis, 2022. "Archetypal Analysis for population genetics," PLOS Computational Biology, Public Library of Science, vol. 18(8), pages 1-17, August.
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