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An atlas of active enhancers across human cell types and tissues

Citations

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Cited by:

  1. Duc-Hau Le, 2021. "A network-based method for predicting disease-associated enhancers," PLOS ONE, Public Library of Science, vol. 16(12), pages 1-20, December.
  2. Milton Pividori & Sumei Lu & Binglan Li & Chun Su & Matthew E. Johnson & Wei-Qi Wei & Qiping Feng & Bahram Namjou & Krzysztof Kiryluk & Iftikhar J. Kullo & Yuan Luo & Blair D. Sullivan & Benjamin F. V, 2023. "Projecting genetic associations through gene expression patterns highlights disease etiology and drug mechanisms," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
  3. Feng Bai & Peng Shu & Heng Deng & Yi Wu & Yao Chen & Mengbo Wu & Tao Ma & Yang Zhang & Julien Pirrello & Zhengguo Li & Yiguo Hong & Mondher Bouzayen & Mingchun Liu, 2024. "A distal enhancer guides the negative selection of toxic glycoalkaloids during tomato domestication," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
  4. María Gordillo-Marañón & Magdalena Zwierzyna & Pimphen Charoen & Fotios Drenos & Sandesh Chopade & Tina Shah & Jorgen Engmann & Nishi Chaturvedi & Olia Papacosta & Goya Wannamethee & Andrew Wong & Ree, 2021. "Validation of lipid-related therapeutic targets for coronary heart disease prevention using human genetics," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
  5. Jodi T. Thomas & Jackson G. Thorp & Floris Huider & Poppy Z. Grimes & Rujia Wang & Pierre Youssef & Jonathan R. I. Coleman & Enda M. Byrne & Mark Adams & Sarah E. Medland & Ian B. Hickie & Catherine M, 2025. "Sex-stratified genome-wide association meta-analysis of major depressive disorder," Nature Communications, Nature, vol. 16(1), pages 1-15, December.
  6. Yuanyuan Luan & Yan Fang & Lin Jiang & Yuehui Ma & Shangjie Wu & Junwen Zhou & Yabin Pu & Qianjun Zhao & Xiaohong He, 2022. "Landscape of Global Gene Expression Reveals Distinctive Tissue Characteristics in Bactrian Camels ( Camelus bactrianus )," Agriculture, MDPI, vol. 12(7), pages 1-15, July.
  7. Charley Xia & Sarah J. Pickett & David C. M. Liewald & Alexander Weiss & Gavin Hudson & W. David Hill, 2023. "The contributions of mitochondrial and nuclear mitochondrial genetic variation to neuroticism," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
  8. Saki Gotoh-Saito & Ryoko Wada & Tomoe Nishimura & Hideya Kawaji, 2025. "Drug-induced cis-regulatory elements in human hepatocytes affect molecular phenotypes associated with adverse reactions," Nature Communications, Nature, vol. 16(1), pages 1-13, December.
  9. Kota Hamamoto & Yusuke Umemura & Shiho Makino & Takashi Fukaya, 2023. "Dynamic interplay between non-coding enhancer transcription and gene activity in development," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
  10. Parker C. Wilson & Yoshiharu Muto & Haojia Wu & Anil Karihaloo & Sushrut S. Waikar & Benjamin D. Humphreys, 2022. "Multimodal single cell sequencing implicates chromatin accessibility and genetic background in diabetic kidney disease progression," Nature Communications, Nature, vol. 13(1), pages 1-20, December.
  11. Shengkui Zhang & Manrui Zhang & Yuxin Yuan & Zilin Li & Xihao Li & Xiaoyu Li, 2025. "Health risks and genetic architecture of objectively measured multidimensional sleep health," Nature Communications, Nature, vol. 16(1), pages 1-16, December.
  12. Takayoshi Matsumura & Haruhito Totani & Yoshitaka Gunji & Masahiro Fukuda & Rui Yokomori & Jianwen Deng & Malini Rethnam & Chong Yang & Tze King Tan & Tadayoshi Karasawa & Kazuomi Kario & Masafumi Tak, 2022. "A Myb enhancer-guided analysis of basophil and mast cell differentiation," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
  13. Zhishan Chen & Xingyi Guo & Ran Tao & Jeroen R. Huyghe & Philip J. Law & Ceres Fernandez-Rozadilla & Jie Ping & Guochong Jia & Jirong Long & Chao Li & Quanhu Shen & Yuhan Xie & Maria N. Timofeeva & Mi, 2024. "Fine-mapping analysis including over 254,000 East Asian and European descendants identifies 136 putative colorectal cancer susceptibility genes," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
  14. Vladyslava Gorbovytska & Seung-Kyoon Kim & Filiz Kuybu & Michael Götze & Dahun Um & Keunsoo Kang & Andreas Pittroff & Theresia Brennecke & Lisa-Marie Schneider & Alexander Leitner & Tae-Kyung Kim & Cl, 2022. "Enhancer RNAs stimulate Pol II pause release by harnessing multivalent interactions to NELF," Nature Communications, Nature, vol. 13(1), pages 1-22, December.
  15. Sarah K. Sasse & Amber Dahlin & Lynn Sanford & Margaret A. Gruca & Arnav Gupta & Fabienne Gally & Ann Chen Wu & Carlos Iribarren & Robin D. Dowell & Scott T. Weiss & Anthony N. Gerber, 2025. "Enhancer RNA transcription pinpoints functional genetic variants linked to asthma," Nature Communications, Nature, vol. 16(1), pages 1-14, December.
  16. Charles Limouse & Owen K. Smith & David Jukam & Kelsey A. Fryer & William J. Greenleaf & Aaron F. Straight, 2023. "Global mapping of RNA-chromatin contacts reveals a proximity-dominated connectivity model for ncRNA-gene interactions," Nature Communications, Nature, vol. 14(1), pages 1-21, December.
  17. Bingnan Li & Patrice Zeis & Yujie Zhang & Alisa Alekseenko & Eliska Fürst & Yerma Pareja Sanchez & Gen Lin & Manu M. Tekkedil & Ilaria Piazza & Lars M. Steinmetz & Vicent Pelechano, 2023. "Differential regulation of mRNA stability modulates transcriptional memory and facilitates environmental adaptation," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
  18. Chirag Nepal & Jesper B. Andersen, 2023. "Alternative promoters in CpG depleted regions are prevalently associated with epigenetic misregulation of liver cancer transcriptomes," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
  19. Anna Gui & Anja Hollowell & Emilie M. Wigdor & Morgan J. Morgan & Laurie J. Hannigan & Elizabeth C. Corfield & Veronika Odintsova & Jouke-Jan Hottenga & Andrew Wong & René Pool & Harriet Cullen & Siân, 2025. "Genome-wide association meta-analysis of age at onset of walking in over 70,000 infants of European ancestry," Nature Human Behaviour, Nature, vol. 9(7), pages 1470-1487, July.
  20. Jiankang Wang & Masashige Bando & Katsuhiko Shirahige & Ryuichiro Nakato, 2022. "Large-scale multi-omics analysis suggests specific roles for intragenic cohesin in transcriptional regulation," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
  21. Alan Yue Yang Teo & Jordan W. Squair & Gregoire Courtine & Michael A. Skinnider, 2024. "Best practices for differential accessibility analysis in single-cell epigenomics," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
  22. Roger Mulet-Lazaro & Stanley Herk & Margit Nuetzel & Aniko Sijs-Szabo & Noelia Díaz & Katherine Kelly & Claudia Erpelinck-Verschueren & Lucia Schwarzfischer-Pfeilschifter & Hanna Stanewsky & Ute Acker, 2024. "Epigenetic alterations affecting hematopoietic regulatory networks as drivers of mixed myeloid/lymphoid leukemia," Nature Communications, Nature, vol. 15(1), pages 1-22, December.
  23. Nikoletta Psatha & Pavel Sova & Grigorios Georgolopoulos & Kiriaki Paschoudi & Mineo Iwata & Jordan Bloom & Tatyana Ulyanova & Hao Wang & Alexandra Kirtsou & Ninos-Ioannis Vasiloudis & Matthew S. Wilk, 2025. "Large-scale discovery of potent, compact and erythroid specific enhancers for gene therapy vectors," Nature Communications, Nature, vol. 16(1), pages 1-16, December.
  24. Annkatrin Bressin & Olga Jasnovidova & Mirjam Arnold & Elisabeth Altendorfer & Filip Trajkovski & Thomas A. Kratz & Joanna E. Handzlik & Denes Hnisz & Andreas Mayer, 2023. "High-sensitive nascent transcript sequencing reveals BRD4-specific control of widespread enhancer and target gene transcription," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
  25. Xavier Contreras & David Depierre & Charbel Akkawi & Marina Srbic & Marion Helsmoortel & Maguelone Nogaret & Matthieu LeHars & Kader Salifou & Alexandre Heurteau & Olivier Cuvier & Rosemary Kiernan, 2023. "PAPγ associates with PAXT nuclear exosome to control the abundance of PROMPT ncRNAs," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
  26. Xuejian Cui & Qijin Yin & Zijing Gao & Zhen Li & Xiaoyang Chen & Hairong Lv & Shengquan Chen & Qiao Liu & Wanwen Zeng & Rui Jiang, 2025. "CREATE: cell-type-specific cis-regulatory element identification via discrete embedding," Nature Communications, Nature, vol. 16(1), pages 1-18, December.
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