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Author Correction: Improved prediction of protein-protein interactions using AlphaFold2

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Cited by:

  1. Le Tracy Yu & Mark A. B. Kreutzberger & Thi H. Bui & Maria C. Hancu & Adam C. Farsheed & Edward H. Egelman & Jeffrey D. Hartgerink, 2024. "Exploration of the hierarchical assembly space of collagen-like peptides beyond the triple helix," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
  2. Qianqiao Liu & Beth M. Stadtmueller, 2023. "SIgA structures bound to Streptococcus pyogenes M4 and human CD89 provide insights into host-pathogen interactions," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
  3. Genki Hibi & Taro Shiraishi & Tatsuki Umemura & Kenji Nemoto & Yusuke Ogura & Makoto Nishiyama & Tomohisa Kuzuyama, 2023. "Discovery of type II polyketide synthase-like enzymes for the biosynthesis of cispentacin," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
  4. Mukesh Kumar & Kanchan Singh & Jayant Joshi & Shreya Sharma & Amit Kumar & Karuna Irungbam & Manish Mahawar & Mohini Saini, 2025. "Mechanistic insights into Alpha-Synuclein binding to P2RX7: A molecular dynamic and docking study," PLOS ONE, Public Library of Science, vol. 20(5), pages 1-29, May.
  5. Kazutoshi Tani & Ryo Kanno & Xuan-Cheng Ji & Itsusei Satoh & Yuki Kobayashi & Malgorzata Hall & Long-Jiang Yu & Yukihiro Kimura & Akira Mizoguchi & Bruno M. Humbel & Michael T. Madigan & Zheng-Yu Wang, 2023. "Rhodobacter capsulatus forms a compact crescent-shaped LH1–RC photocomplex," Nature Communications, Nature, vol. 14(1), pages 1-9, December.
  6. Zhiye Guo & Jian Liu & Jeffrey Skolnick & Jianlin Cheng, 2022. "Prediction of inter-chain distance maps of protein complexes with 2D attention-based deep neural networks," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
  7. Tânia F. Custódio & Maxime Killer & Dingquan Yu & Virginia Puente & Daniel P. Teufel & Alexander Pautsch & Gisela Schnapp & Marc Grundl & Jan Kosinski & Christian Löw, 2023. "Molecular basis of TASL recruitment by the peptide/histidine transporter 1, PHT1," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
  8. Patrick Bryant & Frank Noé, 2024. "Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile," PLOS Computational Biology, Public Library of Science, vol. 20(7), pages 1-12, July.
  9. Yinxia Liu & Lingyun Zhao & Jinshan Long & Zhenye Huang & Ying Long & Jianjun He & Jian-Hui Jiang, 2025. "A generalizable approach for programming protease-responsive conformationally inhibited artificial transcriptional factors," Nature Communications, Nature, vol. 16(1), pages 1-14, December.
  10. Megha Roy & Aurore Sanchez & Raphael Guerois & Issam Senoussi & Arianna Cerana & Jacopo Sgrignani & Andrea Cavalli & Andrea Rinaldi & Petr Cejka, 2025. "EXO1 promotes the meiotic MLH1-MLH3 endonuclease through conserved interactions with MLH1, MSH4 and DNA," Nature Communications, Nature, vol. 16(1), pages 1-15, December.
  11. Hélène Bret & Jinmei Gao & Diego Javier Zea & Jessica Andreani & Raphaël Guerois, 2024. "From interaction networks to interfaces, scanning intrinsically disordered regions using AlphaFold2," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
  12. Patrick Bryant & Gabriele Pozzati & Wensi Zhu & Aditi Shenoy & Petras Kundrotas & Arne Elofsson, 2022. "Predicting the structure of large protein complexes using AlphaFold and Monte Carlo tree search," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
  13. Lan Hu & Jing Han & Hao-Da Wang & Zhou-Hua Cheng & Chang-Ce Lv & Dong-Feng Liu & Han-Qing Yu, 2025. "A universal and wide-range cytosine base editor via domain-inlaid and fidelity-optimized CRISPR-FrCas9," Nature Communications, Nature, vol. 16(1), pages 1-17, December.
  14. Patrick Bryant & Frank Noé, 2024. "Structure prediction of alternative protein conformations," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
  15. Carlos A Gandarilla-Pérez & Sergio Pinilla & Anne-Florence Bitbol & Martin Weigt, 2023. "Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins," PLOS Computational Biology, Public Library of Science, vol. 19(3), pages 1-19, March.
  16. Z. Faidon Brotzakis & Shengyu Zhang & Mhd Hussein Murtada & Michele Vendruscolo, 2025. "AlphaFold prediction of structural ensembles of disordered proteins," Nature Communications, Nature, vol. 16(1), pages 1-9, December.
  17. Jian Sun & Guangchen Zhang & Zhibo Cui & Ximan Kong & Xiaoyu Yu & Rui Gui & Yuqing Han & Zhuan Li & Hong Lang & Yuchen Hua & Xuemin Zhang & Quan Xu & Liang Tang & Zhengjin Xu & Dianrong Ma & Wenfu Che, 2022. "Regain flood adaptation in rice through a 14-3-3 protein OsGF14h," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
  18. Matthew C. Gaines & Michail N. Isupov & Mathew McLaren & Clara L. Mollat & Risat Ul Haque & Jake K. Stephenson & Shamphavi Sivabalasarma & Cyril Hanus & Daniel Kattnig & Vicki A. M. Gold & Sonja Alber, 2024. "Towards a molecular picture of the archaeal cell surface," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
  19. Brooke M. Britton & Remy A. Yovanno & Sara F. Costa & Joshua McCausland & Albert Y. Lau & Jie Xiao & Zach Hensel, 2023. "Conformational changes in the essential E. coli septal cell wall synthesis complex suggest an activation mechanism," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
  20. Andreas Lackner & Michael Müller & Magdalena Gamperl & Delyana Stoeva & Olivia Langmann & Henrieta Papuchova & Elisabeth Roitinger & Gerhard Dürnberger & Richard Imre & Karl Mechtler & Paulina A. Lato, 2023. "The Fgf/Erf/NCoR1/2 repressive axis controls trophoblast cell fate," Nature Communications, Nature, vol. 14(1), pages 1-20, December.
  21. Devlina Chakravarty & Joseph W. Schafer & Ethan A. Chen & Joseph F. Thole & Leslie A. Ronish & Myeongsang Lee & Lauren L. Porter, 2024. "AlphaFold predictions of fold-switched conformations are driven by structure memorization," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
  22. Christoph Buhlheller & Theo Sagmeister & Christoph Grininger & Nina Gubensäk & Uwe B. Sleytr & Isabel Usón & Tea Pavkov-Keller, 2024. "SymProFold: Structural prediction of symmetrical biological assemblies," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
  23. Jan Philipp Dobert & Jan-Hannes Schäfer & Thomas Dal Maso & Priyadarshini Ravindran & Dustin J. E. Huard & Eileen Socher & Lisa A. Schildmeyer & Raquel L. Lieberman & Wim Versées & Arne Moeller & Frie, 2025. "Cryo-TEM structure of β-glucocerebrosidase in complex with its transporter LIMP-2," Nature Communications, Nature, vol. 16(1), pages 1-14, December.
  24. Yuteng Weng & Yanhuizhi Feng & Zeyuan Li & Shuyu Xu & Di Wu & Jie Huang & Haicheng Wang & Zuolin Wang, 2024. "Zfp260 choreographs the early stage osteo-lineage commitment of skeletal stem cells," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
  25. Yang Yue & Shu Li & Yihua Cheng & Lie Wang & Tingjun Hou & Zexuan Zhu & Shan He, 2024. "Integration of molecular coarse-grained model into geometric representation learning framework for protein-protein complex property prediction," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
  26. Marin Matic & Pasquale Miglionico & Manae Tatsumi & Asuka Inoue & Francesco Raimondi, 2023. "GPCRome-wide analysis of G-protein-coupling diversity using a computational biology approach," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
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