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Approximate large-scale Bayesian spatial modeling with application to quantitative magnetic resonance imaging

Author

Listed:
  • Selma Metzner

    (Physikalisch–Technische Bundesanstalt)

  • Gerd Wübbeler

    (Physikalisch–Technische Bundesanstalt)

  • Clemens Elster

    (Physikalisch–Technische Bundesanstalt)

Abstract

We consider the Bayesian inference of nonlinear, large-scale regression problems in which the parameters model the spatial distribution of some property. A homoscedastic Gaussian sampling distribution is supposed as well as certain assumptions about the regression function. Propriety of the posterior and the existence of its moments are explored when using improper prior distributions expressing different levels of prior knowledge, ranging from a purely noninformative prior over intrinsic Gaussian Markov random field priors to a partition prior. The considered class of problems includes magnetic resonance fingerprinting (MRF). We apply an approximate Bayesian inference to this particular application and demonstrate its practicability in dimensions up to $$10^5$$ 10 5 or larger. The benefit of incorporating substantial prior knowledge is illustrated. By analyzing simulated realistic MRF data, it is shown that MAP estimates can significantly improve the results achieved with maximum likelihood estimation.

Suggested Citation

  • Selma Metzner & Gerd Wübbeler & Clemens Elster, 2019. "Approximate large-scale Bayesian spatial modeling with application to quantitative magnetic resonance imaging," AStA Advances in Statistical Analysis, Springer;German Statistical Society, vol. 103(3), pages 333-355, September.
  • Handle: RePEc:spr:alstar:v:103:y:2019:i:3:d:10.1007_s10182-018-00334-0
    DOI: 10.1007/s10182-018-00334-0
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    References listed on IDEAS

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    1. David M. Blei & Alp Kucukelbir & Jon D. McAuliffe, 2017. "Variational Inference: A Review for Statisticians," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 112(518), pages 859-877, April.
    2. Nishii, Ryuei & Eguchi, Shinto, 2006. "Image classification based on Markov random field models with Jeffreys divergence," Journal of Multivariate Analysis, Elsevier, vol. 97(9), pages 1997-2008, October.
    3. Smith, Michael & Fahrmeir, Ludwig, 2007. "Spatial Bayesian Variable Selection With Application to Functional Magnetic Resonance Imaging," Journal of the American Statistical Association, American Statistical Association, vol. 102, pages 417-431, June.
    4. Dan Ma & Vikas Gulani & Nicole Seiberlich & Kecheng Liu & Jeffrey L. Sunshine & Jeffrey L. Duerk & Mark A. Griswold, 2013. "Magnetic resonance fingerprinting," Nature, Nature, vol. 495(7440), pages 187-192, March.
    5. Clemens Elster & Gerd Wübbeler, 2017. "Bayesian inference using a noninformative prior for linear Gaussian random coefficient regression with inhomogeneous within-class variances," Computational Statistics, Springer, vol. 32(1), pages 51-69, March.
    6. Håvard Rue & Sara Martino & Nicolas Chopin, 2009. "Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(2), pages 319-392, April.
    7. Garthwaite, Paul H. & Kadane, Joseph B. & O'Hagan, Anthony, 2005. "Statistical Methods for Eliciting Probability Distributions," Journal of the American Statistical Association, American Statistical Association, vol. 100, pages 680-701, June.
    8. Paul Schmidt & Volker J Schmid & Christian Gaser & Dorothea Buck & Susanne Bührlen & Annette Förschler & Mark Mühlau, 2013. "Fully Bayesian Inference for Structural MRI: Application to Segmentation and Statistical Analysis of T2-Hypointensities," PLOS ONE, Public Library of Science, vol. 8(7), pages 1-14, July.
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