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PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks

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  • Thong Pham
  • Paul Sheridan
  • Hidetoshi Shimodaira

Abstract

Preferential attachment is a stochastic process that has been proposed to explain certain topological features characteristic of complex networks from diverse domains. The systematic investigation of preferential attachment is an important area of research in network science, not only for the theoretical matter of verifying whether this hypothesized process is operative in real-world networks, but also for the practical insights that follow from knowledge of its functional form. Here we describe a maximum likelihood based estimation method for the measurement of preferential attachment in temporal complex networks. We call the method PAFit, and implement it in an R package of the same name. PAFit constitutes an advance over previous methods primarily because we based it on a nonparametric statistical framework that enables attachment kernel estimation free of any assumptions about its functional form. We show this results in PAFit outperforming the popular methods of Jeong and Newman in Monte Carlo simulations. What is more, we found that the application of PAFit to a publically available Flickr social network dataset yielded clear evidence for a deviation of the attachment kernel from the popularly assumed log-linear form. Independent of our main work, we provide a correction to a consequential error in Newman’s original method which had evidently gone unnoticed since its publication over a decade ago.

Suggested Citation

  • Thong Pham & Paul Sheridan & Hidetoshi Shimodaira, 2015. "PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks," PLOS ONE, Public Library of Science, vol. 10(9), pages 1-18, September.
  • Handle: RePEc:plo:pone00:0137796
    DOI: 10.1371/journal.pone.0137796
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    Cited by:

    1. Servedio, Vito D.P. & Ferreira, Márcia R. & Reisz, Niklas & Costas, Rodrigo & Thurner, Stefan, 2023. "Scale-free growth in regional scientific capacity building explains long-term scientific dominance," Chaos, Solitons & Fractals, Elsevier, vol. 167(C).
    2. C Ben Gibson & Norbou Buchler & Blaine Hoffman & Claire-Genevieve La Fleur, 2019. "Participation shifts explain degree distributions in a human communications network," PLOS ONE, Public Library of Science, vol. 14(5), pages 1-13, May.
    3. Guillermo Armando Ronda-Pupo & Thong Pham, 2018. "The evolutions of the rich get richer and the fit get richer phenomena in scholarly networks: the case of the strategic management journal," Scientometrics, Springer;Akadémiai Kiadó, vol. 116(1), pages 363-383, July.
    4. Li, Bo & Sun, Duoyong & Bai, Guanghan, 2017. "Empirical research on evolutionary behavior of covert network with preference measurement," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 471(C), pages 33-43.
    5. Pinto, Pablo E. & Vallone, Andres & Honores, Guillermo, 2019. "The structure of collaboration networks: Findings from three decades of co-invention patents in Chile," Journal of Informetrics, Elsevier, vol. 13(4).
    6. Guillermo Armando Ronda-Pupo & J. Sylvan Katz, 2017. "The scaling relationship between degree centrality of countries and their citation-based performance on Management Information Systems," Scientometrics, Springer;Akadémiai Kiadó, vol. 112(3), pages 1285-1299, September.
    7. Farid Naufal Aslam & Andry Alamsyah, 2021. "The Small World Phenomenon and Network Analysis of ICT Startup Investment in Indonesia and Singapore," Papers 2102.09102, arXiv.org.
    8. Gerardo Iñiguez & Sara Heydari & János Kertész & Jari Saramäki, 2023. "Universal patterns in egocentric communication networks," Nature Communications, Nature, vol. 14(1), pages 1-9, December.
    9. Inoue, Masaaki & Pham, Thong & Shimodaira, Hidetoshi, 2020. "Joint estimation of non-parametric transitivity and preferential attachment functions in scientific co-authorship networks," Journal of Informetrics, Elsevier, vol. 14(3).

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