PBMDA: A novel and effective path-based computational model for miRNA-disease association prediction
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DOI: 10.1371/journal.pcbi.1005455
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- Catherine A. O’Brien & Aaron Pollett & Steven Gallinger & John E. Dick, 2007. "A human colon cancer cell capable of initiating tumour growth in immunodeficient mice," Nature, Nature, vol. 445(7123), pages 106-110, January.
- Brenda J. Reinhart & Frank J. Slack & Michael Basson & Amy E. Pasquinelli & Jill C. Bettinger & Ann E. Rougvie & H. Robert Horvitz & Gary Ruvkun, 2000. "The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans," Nature, Nature, vol. 403(6772), pages 901-906, February.
- Gunter Meister & Thomas Tuschl, 2004. "Mechanisms of gene silencing by double-stranded RNA," Nature, Nature, vol. 431(7006), pages 343-349, September.
- Li Ma & Julie Teruya-Feldstein & Robert A. Weinberg, 2007. "Tumour invasion and metastasis initiated by microRNA-10b in breast cancer," Nature, Nature, vol. 449(7163), pages 682-688, October.
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