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RASA2 ablation in T cells boosts antigen sensitivity and long-term function

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Listed:
  • Julia Carnevale

    (Gladstone–UCSF Institute of Genomic Immunology
    University of California, San Francisco
    University of California, San Francisco
    University of California, San Francisco)

  • Eric Shifrut

    (Gladstone–UCSF Institute of Genomic Immunology
    Tel Aviv University
    Tel Aviv University
    Tel Aviv Sourasky Medical Center)

  • Nupura Kale

    (University of California, San Francisco
    University of California, San Francisco)

  • William A. Nyberg

    (Gladstone–UCSF Institute of Genomic Immunology
    University of California, San Francisco
    University of California, San Francisco
    University of California, San Francisco)

  • Franziska Blaeschke

    (Gladstone–UCSF Institute of Genomic Immunology)

  • Yan Yi Chen

    (Gladstone–UCSF Institute of Genomic Immunology)

  • Zhongmei Li

    (Gladstone–UCSF Institute of Genomic Immunology)

  • Sagar P. Bapat

    (University of California San Francisco
    University of California, San Francisco)

  • Morgan E. Diolaiti

    (University of California, San Francisco)

  • Patrick O’Leary

    (University of California, San Francisco)

  • Shane Vedova

    (Gladstone–UCSF Institute of Genomic Immunology)

  • Julia Belk

    (Stanford University)

  • Bence Daniel

    (Stanford University)

  • Theodore L. Roth

    (Stanford University)

  • Stefanie Bachl

    (Gladstone–UCSF Institute of Genomic Immunology
    University of California, San Francisco)

  • Alejandro Allo Anido

    (St Jude Children’s Research Hospital)

  • Brooke Prinzing

    (St Jude Children’s Research Hospital)

  • Jorge Ibañez-Vega

    (St Jude Children’s Research Hospital)

  • Shannon Lange

    (St Jude Children’s Research Hospital)

  • Dalia Haydar

    (St Jude Children’s Research Hospital)

  • Marie Luetke-Eversloh

    (St Jude Children’s Research Hospital)

  • Maelys Born-Bony

    (St Jude Children’s Research Hospital)

  • Bindu Hegde

    (University of California, San Francisco)

  • Scott Kogan

    (University of California, San Francisco
    University of California, San Francisco)

  • Tobias Feuchtinger

    (Dr von Hauner Children’s Hospital, University Hospital, LMU)

  • Hideho Okada

    (University of California, San Francisco
    University of California, San Francisco
    University of California, San Francisco)

  • Ansuman T. Satpathy

    (Gladstone–UCSF Institute of Genomic Immunology
    Stanford University
    Stanford University)

  • Kevin Shannon

    (University of California, San Francisco
    University of California, San Francisco)

  • Stephen Gottschalk

    (St Jude Children’s Research Hospital)

  • Justin Eyquem

    (Gladstone–UCSF Institute of Genomic Immunology
    University of California, San Francisco
    University of California, San Francisco
    University of California, San Francisco)

  • Giedre Krenciute

    (St Jude Children’s Research Hospital)

  • Alan Ashworth

    (University of California, San Francisco
    University of California, San Francisco)

  • Alexander Marson

    (Gladstone–UCSF Institute of Genomic Immunology
    University of California, San Francisco
    University of California, San Francisco
    University of California, San Francisco)

Abstract

The efficacy of adoptive T cell therapies for cancer treatment can be limited by suppressive signals from both extrinsic factors and intrinsic inhibitory checkpoints1,2. Targeted gene editing has the potential to overcome these limitations and enhance T cell therapeutic function3–10. Here we performed multiple genome-wide CRISPR knock-out screens under different immunosuppressive conditions to identify genes that can be targeted to prevent T cell dysfunction. These screens converged on RASA2, a RAS GTPase-activating protein (RasGAP) that we identify as a signalling checkpoint in human T cells, which is downregulated upon acute T cell receptor stimulation and can increase gradually with chronic antigen exposure. RASA2 ablation enhanced MAPK signalling and chimeric antigen receptor (CAR) T cell cytolytic activity in response to target antigen. Repeated tumour antigen stimulations in vitro revealed that RASA2-deficient T cells show increased activation, cytokine production and metabolic activity compared with control cells, and show a marked advantage in persistent cancer cell killing. RASA2-knockout CAR T cells had a competitive fitness advantage over control cells in the bone marrow in a mouse model of leukaemia. Ablation of RASA2 in multiple preclinical models of T cell receptor and CAR T cell therapies prolonged survival in mice xenografted with either liquid or solid tumours. Together, our findings highlight RASA2 as a promising target to enhance both persistence and effector function in T cell therapies for cancer treatment.

Suggested Citation

  • Julia Carnevale & Eric Shifrut & Nupura Kale & William A. Nyberg & Franziska Blaeschke & Yan Yi Chen & Zhongmei Li & Sagar P. Bapat & Morgan E. Diolaiti & Patrick O’Leary & Shane Vedova & Julia Belk &, 2022. "RASA2 ablation in T cells boosts antigen sensitivity and long-term function," Nature, Nature, vol. 609(7925), pages 174-182, September.
  • Handle: RePEc:nat:nature:v:609:y:2022:i:7925:d:10.1038_s41586-022-05126-w
    DOI: 10.1038/s41586-022-05126-w
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    Cited by:

    1. Marcel P. Trefny & Nicole Kirchhammer & Priska Auf der Maur & Marina Natoli & Dominic Schmid & Markus Germann & Laura Fernandez Rodriguez & Petra Herzig & Jonas Lötscher & Maryam Akrami & Jane C. Stin, 2023. "Deletion of SNX9 alleviates CD8 T cell exhaustion for effective cellular cancer immunotherapy," Nature Communications, Nature, vol. 14(1), pages 1-21, December.

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