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Visualizing vibrational normal modes of a single molecule with atomically confined light

Author

Listed:
  • Joonhee Lee

    (University of California)

  • Kevin T. Crampton

    (University of California
    Pacific Northwest National Laboratory)

  • Nicholas Tallarida

    (University of California
    Jet Propulsion Laboratory, California Institute of Technology)

  • V. Ara Apkarian

    (University of California)

Abstract

The internal vibrations of molecules drive the structural transformations that underpin chemistry and cellular function. While vibrational frequencies are measured by spectroscopy, the normal modes of motion are inferred through theory because their visualization would require microscopy with ångström-scale spatial resolution—nearly three orders of magnitude smaller than the diffraction limit in optics1. Using a metallic tip to focus light and taking advantage of the surface-enhanced Raman effect2 to amplify the signal from individual molecules, tip-enhanced Raman spectromicroscopy (TER-SM)3,4 reaches the requisite sub-molecular spatial resolution5, confirming that light can be confined in picocavities6–10 and anticipating the direct visualization of molecular vibrations11–13. Here, by using TER-SM at the precisely controllable junction of a cryogenic ultrahigh-vacuum scanning tunnelling microscope14–16, we show that ångström-scale resolution is attained at subatomic separation between the tip atom and a molecule in the quantum tunnelling regime of plasmons6,8,9,17. We record vibrational spectra within a single molecule, obtain images of normal modes and atomically parse the intramolecular charges and currents driven by vibrations. Our analysis provides a paradigm for optics in the atomistic near-field.

Suggested Citation

  • Joonhee Lee & Kevin T. Crampton & Nicholas Tallarida & V. Ara Apkarian, 2019. "Visualizing vibrational normal modes of a single molecule with atomically confined light," Nature, Nature, vol. 568(7750), pages 78-82, April.
  • Handle: RePEc:nat:nature:v:568:y:2019:i:7750:d:10.1038_s41586-019-1059-9
    DOI: 10.1038/s41586-019-1059-9
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    Cited by:

    1. Yang Luo & Alberto Martin-Jimenez & Michele Pisarra & Fernando Martin & Manish Garg & Klaus Kern, 2023. "Imaging and controlling coherent phonon wave packets in single graphene nanoribbons," Nature Communications, Nature, vol. 14(1), pages 1-9, December.
    2. S. E. Ammerman & V. Jelic & Y. Wei & V. N. Breslin & M. Hassan & N. Everett & S. Lee & Q. Sun & C. A. Pignedoli & P. Ruffieux & R. Fasel & T. L. Cocker, 2021. "Lightwave-driven scanning tunnelling spectroscopy of atomically precise graphene nanoribbons," Nature Communications, Nature, vol. 12(1), pages 1-9, December.
    3. Peihui Li & Songjun Hou & Qingqing Wu & Yijian Chen & Boyu Wang & Haiyang Ren & Jinying Wang & Zhaoyi Zhai & Zhongbo Yu & Colin J. Lambert & Chuancheng Jia & Xuefeng Guo, 2023. "The role of halogens in Au–S bond cleavage for energy-differentiated catalysis at the single-bond limit," Nature Communications, Nature, vol. 14(1), pages 1-7, December.
    4. Hao He & Maofeng Cao & Yun Gao & Peng Zheng & Sen Yan & Jin-Hui Zhong & Lei Wang & Dayong Jin & Bin Ren, 2024. "Noise learning of instruments for high-contrast, high-resolution and fast hyperspectral microscopy and nanoscopy," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    5. Jiří Doležal & Sofia Canola & Prokop Hapala & Rodrigo Cezar Campos Ferreira & Pablo Merino & Martin Švec, 2022. "Evidence of exciton-libron coupling in chirally adsorbed single molecules," Nature Communications, Nature, vol. 13(1), pages 1-8, December.
    6. Jack Griffiths & Tamás Földes & Bart Nijs & Rohit Chikkaraddy & Demelza Wright & William M. Deacon & Dénes Berta & Charlie Readman & David-Benjamin Grys & Edina Rosta & Jeremy J. Baumberg, 2021. "Resolving sub-angstrom ambient motion through reconstruction from vibrational spectra," Nature Communications, Nature, vol. 12(1), pages 1-8, December.
    7. Wenhao Fu & Huanyu Chi & Xin Dai & Hongni Zhu & Vince St. Dollente Mesias & Wei Liu & Jinqing Huang, 2023. "Efficient optical plasmonic tweezer-controlled single-molecule SERS characterization of pH-dependent amylin species in aqueous milieus," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    8. Linfei Li & Jeremy F. Schultz & Sayantan Mahapatra & Zhongyi Lu & Xu Zhang & Nan Jiang, 2022. "Chemically identifying single adatoms with single-bond sensitivity during oxidation reactions of borophene," Nature Communications, Nature, vol. 13(1), pages 1-9, December.

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