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Genome sequence of the progenitor of wheat A subgenome Triticum urartu

Author

Listed:
  • Hong-Qing Ling

    (Chinese Academy of Sciences
    University of Chinese Academy of Sciences)

  • Bin Ma

    (Chinese Academy of Sciences)

  • Xiaoli Shi

    (Chinese Academy of Sciences)

  • Hui Liu

    (Chinese Academy of Sciences)

  • Lingli Dong

    (Chinese Academy of Sciences)

  • Hua Sun

    (Chinese Academy of Sciences)

  • Yinghao Cao

    (Chinese Academy of Sciences)

  • Qiang Gao

    (Chinese Academy of Sciences)

  • Shusong Zheng

    (Chinese Academy of Sciences)

  • Ye Li

    (Chinese Academy of Sciences)

  • Ying Yu

    (Chinese Academy of Sciences)

  • Huilong Du

    (University of Chinese Academy of Sciences
    Chinese Academy of Sciences)

  • Ming Qi

    (Chinese Academy of Sciences)

  • Yan Li

    (Chinese Academy of Sciences)

  • Hongwei Lu

    (University of Chinese Academy of Sciences
    Chinese Academy of Sciences)

  • Hua Yu

    (Chinese Academy of Sciences)

  • Yan Cui

    (Chinese Academy of Sciences)

  • Ning Wang

    (Chinese Academy of Sciences)

  • Chunlin Chen

    (Chinese Academy of Sciences)

  • Huilan Wu

    (Chinese Academy of Sciences)

  • Yan Zhao

    (Chinese Academy of Sciences)

  • Juncheng Zhang

    (Chinese Academy of Sciences)

  • Yiwen Li

    (Chinese Academy of Sciences)

  • Wenjuan Zhou

    (Chinese Academy of Sciences)

  • Bairu Zhang

    (Chinese Academy of Sciences)

  • Weijuan Hu

    (Chinese Academy of Sciences)

  • Michiel J. T. Eijk

    (Keygene N.V.)

  • Jifeng Tang

    (Keygene N.V.)

  • Hanneke M. A. Witsenboer

    (Keygene N.V.)

  • Shancen Zhao

    (BGI-Shenzhen)

  • Zhensheng Li

    (Chinese Academy of Sciences)

  • Aimin Zhang

    (Chinese Academy of Sciences)

  • Daowen Wang

    (Chinese Academy of Sciences
    University of Chinese Academy of Sciences)

  • Chengzhi Liang

    (University of Chinese Academy of Sciences
    Chinese Academy of Sciences)

Abstract

Triticum urartu (diploid, AA) is the progenitor of the A subgenome of tetraploid (Triticum turgidum, AABB) and hexaploid (Triticum aestivum, AABBDD) wheat1,2. Genomic studies of T. urartu have been useful for investigating the structure, function and evolution of polyploid wheat genomes. Here we report the generation of a high-quality genome sequence of T. urartu by combining bacterial artificial chromosome (BAC)-by-BAC sequencing, single molecule real-time whole-genome shotgun sequencing3, linked reads and optical mapping4,5. We assembled seven chromosome-scale pseudomolecules and identified protein-coding genes, and we suggest a model for the evolution of T. urartu chromosomes. Comparative analyses with genomes of other grasses showed gene loss and amplification in the numbers of transposable elements in the T. urartu genome. Population genomics analysis of 147 T. urartu accessions from across the Fertile Crescent showed clustering of three groups, with differences in altitude and biostress, such as powdery mildew disease. The T. urartu genome assembly provides a valuable resource for studying genetic variation in wheat and related grasses, and promises to facilitate the discovery of genes that could be useful for wheat improvement.

Suggested Citation

  • Hong-Qing Ling & Bin Ma & Xiaoli Shi & Hui Liu & Lingli Dong & Hua Sun & Yinghao Cao & Qiang Gao & Shusong Zheng & Ye Li & Ying Yu & Huilong Du & Ming Qi & Yan Li & Hongwei Lu & Hua Yu & Yan Cui & Nin, 2018. "Genome sequence of the progenitor of wheat A subgenome Triticum urartu," Nature, Nature, vol. 557(7705), pages 424-428, May.
    • Handle: RePEc:nat:nature:v:557:y:2018:i:7705:d:10.1038_s41586-018-0108-0
    DOI: 10.1038/s41586-018-0108-0
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    Citations

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    Cited by:

    1. Guotai Yu & Oadi Matny & Nicolas Champouret & Burkhard Steuernagel & Matthew J. Moscou & Inmaculada Hernández-Pinzón & Phon Green & Sadiye Hayta & Mark Smedley & Wendy Harwood & Ngonidzashe Kangara & , 2022. "Aegilops sharonensis genome-assisted identification of stem rust resistance gene Sr62," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    2. Habteab Goitom Gebremedhin & Yahui Li & Jinghuang Hu & Dan Qiu & Qiuhong Wu & Hongjun Zhang & Li Yang & Yang Zhou & Yijun Zhou & Zhiyong Liu & Peng Zhang & Hongjie Li, 2022. "Development of KASP and SSR Markers for PmQ , a Recessive Gene Conferring Powdery Mildew Resistance in Wheat Landrace Qingxinmai," Agriculture, MDPI, vol. 12(9), pages 1-10, August.
    3. Zijuan Li & Yuyun Zhang & Ci-Hang Ding & Yan Chen & Haoyu Wang & Jinyu Zhang & Songbei Ying & Meiyue Wang & Rongzhi Zhang & Jinyi Liu & Yilin Xie & Tengfei Tang & Huishan Diao & Luhuan Ye & Yili Zhuan, 2023. "LHP1-mediated epigenetic buffering of subgenome diversity and defense responses confers genome plasticity and adaptability in allopolyploid wheat," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    4. Liqiang Song & Ruihui Wang & Xueju Yang & Aimin Zhang & Dongcheng Liu, 2023. "Molecular Markers and Their Applications in Marker-Assisted Selection (MAS) in Bread Wheat ( Triticum aestivum L.)," Agriculture, MDPI, vol. 13(3), pages 1-18, March.
    5. Huanhuan Li & Wenqiang Men & Chao Ma & Qianwen Liu & Zhenjie Dong & Xiubin Tian & Chaoli Wang & Cheng Liu & Harsimardeep S. Gill & Pengtao Ma & Zhibin Zhang & Bao Liu & Yue Zhao & Sunish K. Sehgal & W, 2024. "Wheat powdery mildew resistance gene Pm13 encodes a mixed lineage kinase domain-like protein," Nature Communications, Nature, vol. 15(1), pages 1-13, December.

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