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Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

Author

Listed:
  • Andrew H. Paterson

    (Plant Genome Mapping Laboratory, University of Georgia)

  • Jonathan F. Wendel

    (Evolution and Organismal Biology, Iowa State University)

  • Heidrun Gundlach

    (MIPS/IBIS Institute for Bioinformatics and System Biology, German Research Center for Environmental Health (GmbH), 85764 Neuherberg, Germany)

  • Hui Guo

    (Plant Genome Mapping Laboratory, University of Georgia)

  • Jerry Jenkins

    (Department of Energy Joint Genome Institute
    HudsonAlpha Institute of Biotechnology)

  • Dianchuan Jin

    (Center for Genomics and Computational Biology, School of Life Sciences, and School of Sciences, Hebei United University, Tangshan, Hebei 063000, China)

  • Danny Llewellyn

    (CSIRO Plant Industry, Canberra, ACT 2601, Australia)

  • Kurtis C. Showmaker

    (Institute for Genomics, Biocomputing & Biotechnology, Mississippi State University)

  • Shengqiang Shu

    (Department of Energy Joint Genome Institute)

  • Joshua Udall

    (Brigham Young University)

  • Mi-jeong Yoo

    (Evolution and Organismal Biology, Iowa State University)

  • Robert Byers

    (Brigham Young University)

  • Wei Chen

    (Center for Genomics and Computational Biology, School of Life Sciences, and School of Sciences, Hebei United University, Tangshan, Hebei 063000, China)

  • Adi Doron-Faigenboim

    (Plant Sciences Institute, ARO, Bet-Dagan 50250, Israel)

  • Mary V. Duke

    (Jamie Whitten Delta States Research Center, USDA-ARS)

  • Lei Gong

    (Evolution and Organismal Biology, Iowa State University)

  • Jane Grimwood

    (Department of Energy Joint Genome Institute
    HudsonAlpha Institute of Biotechnology)

  • Corrinne Grover

    (Evolution and Organismal Biology, Iowa State University)

  • Kara Grupp

    (Evolution and Organismal Biology, Iowa State University)

  • Guanjing Hu

    (Evolution and Organismal Biology, Iowa State University)

  • Tae-ho Lee

    (Plant Genome Mapping Laboratory, University of Georgia)

  • Jingping Li

    (Plant Genome Mapping Laboratory, University of Georgia)

  • Lifeng Lin

    (Plant Genome Mapping Laboratory, University of Georgia)

  • Tao Liu

    (Center for Genomics and Computational Biology, School of Life Sciences, and School of Sciences, Hebei United University, Tangshan, Hebei 063000, China)

  • Barry S. Marler

    (Plant Genome Mapping Laboratory, University of Georgia)

  • Justin T. Page

    (Brigham Young University)

  • Alison W. Roberts

    (University of Rhode Island)

  • Elisson Romanel

    (Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, 21941-901, Brazil)

  • William S. Sanders

    (Institute for Genomics, Biocomputing & Biotechnology, Mississippi State University)

  • Emmanuel Szadkowski

    (Evolution and Organismal Biology, Iowa State University)

  • Xu Tan

    (Plant Genome Mapping Laboratory, University of Georgia)

  • Haibao Tang

    (Plant Genome Mapping Laboratory, University of Georgia
    J. Craig Venter Institute)

  • Chunming Xu

    (Evolution and Organismal Biology, Iowa State University
    Key Laboratory of Molecular Epigenetics of MOE, Unit of Plant Epigenetics, Institute of Genetics & Cytology, Northeast Normal University, Renmin Street, 5268 Changchun, China)

  • Jinpeng Wang

    (Center for Genomics and Computational Biology, School of Life Sciences, and School of Sciences, Hebei United University, Tangshan, Hebei 063000, China)

  • Zining Wang

    (Plant Genome Mapping Laboratory, University of Georgia)

  • Dong Zhang

    (Plant Genome Mapping Laboratory, University of Georgia)

  • Lan Zhang

    (Center for Genomics and Computational Biology, School of Life Sciences, and School of Sciences, Hebei United University, Tangshan, Hebei 063000, China)

  • Hamid Ashrafi

    (Plant Reproductive Biology Extension Center, University of California)

  • Frank Bedon

    (CSIRO Plant Industry, Canberra, ACT 2601, Australia)

  • John E. Bowers

    (Plant Genome Mapping Laboratory, University of Georgia)

  • Curt L. Brubaker

    (CSIRO Plant Industry, Canberra, ACT 2601, Australia
    Bayer CropScience, Technologiepark 38, 9052 Gent, Belgium)

  • Peng W. Chee

    (Coastal Plain Experiment Station, University of Georgia)

  • Sayan Das

    (Plant Genome Mapping Laboratory, University of Georgia)

  • Alan R. Gingle

    (Plant Genome Mapping Laboratory, University of Georgia)

  • Candace H. Haigler

    (North Carolina State University)

  • David Harker

    (Brigham Young University)

  • Lucia V. Hoffmann

    (Centro Nacional de Pesquisa em Algodão, EMBRAPA, Santo Antônio de Góias, GO 75375-000, Brazil)

  • Ran Hovav

    (Plant Sciences Institute, ARO, Bet-Dagan 50250, Israel)

  • Donald C. Jones

    (Cotton Incorporated)

  • Cornelia Lemke

    (Plant Genome Mapping Laboratory, University of Georgia)

  • Shahid Mansoor

    (Plant Genome Mapping Laboratory, University of Georgia
    National Institute for Biotechnology & Genetic Engineering, Faisalabad 38000, Pakistan)

  • Mehboob ur Rahman

    (National Institute for Biotechnology & Genetic Engineering, Faisalabad 38000, Pakistan)

  • Lisa N. Rainville

    (Plant Genome Mapping Laboratory, University of Georgia)

  • Aditi Rambani

    (Brigham Young University)

  • Umesh K. Reddy

    (West Virginia State University, Institute)

  • Jun-kang Rong

    (Plant Genome Mapping Laboratory, University of Georgia)

  • Yehoshua Saranga

    (Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 76100, Israel)

  • Brian E. Scheffler

    (Jamie Whitten Delta States Research Center, USDA-ARS)

  • Jodi A. Scheffler

    (Jamie Whitten Delta States Research Center, USDA-ARS)

  • David M. Stelly

    (Texas A&M University)

  • Barbara A. Triplett

    (Cotton Fiber Bioscience Research, USDA-ARS)

  • Allen Van Deynze

    (Plant Reproductive Biology Extension Center, University of California)

  • Maite F. S. Vaslin

    (Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro 21941-971, Brazil)

  • Vijay N. Waghmare

    (Central Institute for Cotton Research, Nagpur, 440010 Maharashtra, India)

  • Sally A. Walford

    (CSIRO Plant Industry, Canberra, ACT 2601, Australia)

  • Robert J. Wright

    (Texas Tech University)

  • Essam A. Zaki

    (Genetic Engineering & Biotechnology Research Institute, 21934 Alexandria, Egypt)

  • Tianzhen Zhang

    (Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095 Jiangsu, China)

  • Elizabeth S. Dennis

    (CSIRO Plant Industry, Canberra, ACT 2601, Australia)

  • Klaus F. X. Mayer

    (MIPS/IBIS Institute for Bioinformatics and System Biology, German Research Center for Environmental Health (GmbH), 85764 Neuherberg, Germany)

  • Daniel G. Peterson

    (Institute for Genomics, Biocomputing & Biotechnology, Mississippi State University)

  • Daniel S. Rokhsar

    (Department of Energy Joint Genome Institute)

  • Xiyin Wang

    (Plant Genome Mapping Laboratory, University of Georgia
    Center for Genomics and Computational Biology, School of Life Sciences, and School of Sciences, Hebei United University, Tangshan, Hebei 063000, China)

  • Jeremy Schmutz

    (Department of Energy Joint Genome Institute
    HudsonAlpha Institute of Biotechnology)

Abstract

The Gossypium genus is used to investigate emergent consequences of polyploidy in cotton species; comparative genomic analyses reveal a complex evolutionary history including interactions among subgenomes that result in genetic novelty in elite cottons and provide insight into the evolution of spinnable fibres.

Suggested Citation

  • Andrew H. Paterson & Jonathan F. Wendel & Heidrun Gundlach & Hui Guo & Jerry Jenkins & Dianchuan Jin & Danny Llewellyn & Kurtis C. Showmaker & Shengqiang Shu & Joshua Udall & Mi-jeong Yoo & Robert Bye, 2012. "Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres," Nature, Nature, vol. 492(7429), pages 423-427, December.
    • Handle: RePEc:nat:nature:v:492:y:2012:i:7429:d:10.1038_nature11798
    DOI: 10.1038/nature11798
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    Citations

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    Cited by:

    1. Zhen-Hui Wang & Xin-Feng Wang & Tianyuan Lu & Ming-Rui Li & Peng Jiang & Jing Zhao & Si-Tong Liu & Xue-Qi Fu & Jonathan F. Wendel & Yves Peer & Bao Liu & Lin-Feng Li, 2022. "Reshuffling of the ancestral core-eudicot genome shaped chromatin topology and epigenetic modification in Panax," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    2. Qingying Meng & Peihao Xie & Zhongping Xu & Jiwei Tang & Liuyang Hui & Jiaqi Gu & Xinxin Gu & Shihe Jiang & Yuxuan Rong & Jie Zhang & Joshua A. Udall & Corrinne E. Grover & Kai Zheng & Quanjia Chen & , 2025. "Pangenome analysis reveals yield- and fiber-related diversity and interspecific gene flow in Gossypium barbadense L," Nature Communications, Nature, vol. 16(1), pages 1-18, December.
    3. Salman Naveed & Sachin Rustgi, 2023. "Functional Characterization of Candidate Genes, Gohir.D05G103700 and Gohir.D12G153600 , Identified through Expression QTL Analysis Using Virus-Induced Gene Silencing in Upland Cotton ( Gossypium hirsu," Agriculture, MDPI, vol. 13(5), pages 1-12, May.
    4. Victor Loegler & Jan-Niklas Runge & Chris Eberlein & Émilien Peltier & Jules Harrouard & Cécile Miot-Sertier & Warren Albertin & Anne Friedrich & Joseph Schacherer, 2025. "Whole-genome sequencing of 1,060 Brettanomyces bruxellensis isolates reveals significant phenotypic impact of acquired subgenomes in allopolyploids," Nature Communications, Nature, vol. 16(1), pages 1-12, December.
    5. Justine K. Kitony & Kelly Colt & Bradley W. Abramson & Nolan T. Hartwick & Semar Petrus & Emadeldin H. E. Konozy & Nisa Karimi & Levi Yant & Todd P. Michael, 2024. "Chromosome-level baobab genome illuminates its evolutionary trajectory and environmental adaptation," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    6. Ren-Gang Zhang & Hang Zhao & Justin L. Conover & Hong-Yun Shang & De-Tuan Liu & Min-Jie Zhou & Xiong-Fang Liu & Kai-Hua Jia & Shi-Cheng Shao & Meng-Meng Li & Chong-Yang Jin & Yi-Hui Liu & Xiao-Yi Shen, 2025. "Reticulate allopolyploidy and subsequent dysploidy drive evolution and diversification in the cotton family," Nature Communications, Nature, vol. 16(1), pages 1-18, December.

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