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Non-visual photoreceptive brain specification in sea urchin larvae

Author

Listed:
  • Junko Yaguchi

    (University of Tsukuba, Shimoda Marine Research Center)

  • Koki Tsuyuzaki

    (Chiba University, Department of Artificial Intelligence Medicine, Graduate School of Medicine
    Chiba University, Institute for Advanced Academic Research (IAAR)
    RIKEN Center for Biosystems Dynamics Research, Laboratory for Bioinformatics Research
    Japan Science and Technology Agency, PRESTO)

  • Ikutaro Sawada

    (Kitashirakawa-Oiwake, Department of Biophysics, Graduate School of Science, Kyoto University)

  • Atsushi Horiuchi

    (Kitashirakawa-Oiwake, Department of Biophysics, Graduate School of Science, Kyoto University)

  • Naoaki Sakamoto

    (Hiroshima University, Graduate School of Integrated Sciences for Life)

  • Takashi Yamamoto

    (Hiroshima University, Genome Editing Innovation Center)

  • Takahiro Yamashita

    (Kitashirakawa-Oiwake, Department of Biophysics, Graduate School of Science, Kyoto University)

  • Shunsuke Yaguchi

    (University of Tsukuba, Shimoda Marine Research Center
    Japan Science and Technology Agency, PRESTO)

Abstract

Centralized nervous systems enable animals to detect environmental cues and coordinate behavior, but their evolutionary origins in deuterostomes remain unclear. Among deuterostomes, echinoderms—such as sea urchins—have long been thought to lack brain-like structures, especially in larval stages. Although recent gene expression and neural activity studies suggest brain-like properties in sea urchin larvae, direct links to behavior are still emerging. Here, we identify a light-sensitive cluster of neurons in the posterior neuroectoderm of sea urchin larvae. These neurons express UV-sensitive Opsin5 and regulatory genes such as rx, otx, six3, and lhx6, which are conserved in the vertebrate diencephalon. We mapped this domain using single-cell RNA sequencing and in situ hybridization. Knockdown of Opn5L impaired light-dependent swimming, indicating an active role in photoreception. While further work is needed to fully establish circuit-to-behavior relationships, our findings add to growing evidence that sea urchin larvae possess a non-visual photoreceptive neural center with molecular features shared by vertebrate brain regions. This suggests that such domains originated in the deuterostome ancestor and contributed to the early evolution of brain function.

Suggested Citation

  • Junko Yaguchi & Koki Tsuyuzaki & Ikutaro Sawada & Atsushi Horiuchi & Naoaki Sakamoto & Takashi Yamamoto & Takahiro Yamashita & Shunsuke Yaguchi, 2025. "Non-visual photoreceptive brain specification in sea urchin larvae," Nature Communications, Nature, vol. 16(1), pages 1-13, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-65628-9
    DOI: 10.1038/s41467-025-65628-9
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    References listed on IDEAS

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