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Cardiomyocyte lncRNA Cpat maintains cardiac homeostasis and mitochondria function by targeting citrate synthase acetylation

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  • Fan Yu

    (Zhejiang University School of Medicine
    State Key Laboratory of Transvascular Implantation Devices
    Binjiang Institute of Zhejiang University
    Heart Regeneration and Repair Key Laboratory of Zhejiang Province)

  • Jingsi Duan

    (Zhejiang University School of Medicine
    State Key Laboratory of Transvascular Implantation Devices
    Heart Regeneration and Repair Key Laboratory of Zhejiang Province)

  • Zhengyin Lou

    (Zhejiang University School of Medicine
    State Key Laboratory of Transvascular Implantation Devices
    Heart Regeneration and Repair Key Laboratory of Zhejiang Province)

  • Guo-Ping Shi

    (Harvard Medical School)

  • Fuzhe Gong

    (Zhejiang University School of Medicine
    State Key Laboratory of Transvascular Implantation Devices
    Heart Regeneration and Repair Key Laboratory of Zhejiang Province)

  • Lingfeng Zhong

    (Zhejiang University School of Medicine
    State Key Laboratory of Transvascular Implantation Devices
    Heart Regeneration and Repair Key Laboratory of Zhejiang Province)

  • Derong Chen

    (Zhejiang University School of Medicine
    State Key Laboratory of Transvascular Implantation Devices
    Heart Regeneration and Repair Key Laboratory of Zhejiang Province)

  • Li Xu

    (Zhejiang University School of Medicine
    State Key Laboratory of Transvascular Implantation Devices
    Heart Regeneration and Repair Key Laboratory of Zhejiang Province)

  • Tingting Hong

    (Zhejiang University School of Medicine
    State Key Laboratory of Transvascular Implantation Devices
    Heart Regeneration and Repair Key Laboratory of Zhejiang Province)

  • Xinyang Hu

    (Zhejiang University School of Medicine
    State Key Laboratory of Transvascular Implantation Devices
    Heart Regeneration and Repair Key Laboratory of Zhejiang Province)

  • Jinghai Chen

    (Zhejiang University School of Medicine
    State Key Laboratory of Transvascular Implantation Devices
    Heart Regeneration and Repair Key Laboratory of Zhejiang Province
    Zhejiang University School of Medicine)

  • Jian’an Wang

    (Zhejiang University School of Medicine
    State Key Laboratory of Transvascular Implantation Devices
    Heart Regeneration and Repair Key Laboratory of Zhejiang Province)

  • Deling Yin

    (Zhejiang University School of Medicine
    State Key Laboratory of Transvascular Implantation Devices
    Heart Regeneration and Repair Key Laboratory of Zhejiang Province)

Abstract

Myocardial energy metabolism disorders are essential pathophysiology in sepsis-associated myocardial injury. Yet, the underlying mechanisms involving impaired mitochondrial respiratory function upon myocardial injury remain poorly understood. Here we identify an unannotated and cardiomyocyte-enriched long non-coding RNA, Cpat (cardiac-protector-associated transcript), that plays an important role in regulating the dynamics of cardiomyocyte mitochondrial tricarboxylic acid (TCA) cycle. Cpat is essential to the mitochondrial respiratory function by targeting key metabolic enzymes and modulating TCA cycle flux. Specifically, Cpat enhances the association of TCA cycle core components malate dehydrogenase (MDH2), citrate synthase (CS), and aconitase (ACO2). Acetyltransferase general control non-repressed protein-5 (GCN5) acetylates CS and destabilizes the MDH2-CS-ACO2 complex formation. Cpat inhibits this GCN5 activity and facilitates MDH2-CS-ACO2 complex formation and TCA cycle flux. We reveal that Cpat-mediated mitochondrial metabolic homeostasis is vital in mitigating myocardial injury in sepsis-induced cardiomyopathy, positioning Cpat as a promising therapeutic target for preserving myocardial cellular metabolism and function.

Suggested Citation

  • Fan Yu & Jingsi Duan & Zhengyin Lou & Guo-Ping Shi & Fuzhe Gong & Lingfeng Zhong & Derong Chen & Li Xu & Tingting Hong & Xinyang Hu & Jinghai Chen & Jian’an Wang & Deling Yin, 2025. "Cardiomyocyte lncRNA Cpat maintains cardiac homeostasis and mitochondria function by targeting citrate synthase acetylation," Nature Communications, Nature, vol. 16(1), pages 1-20, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-64072-z
    DOI: 10.1038/s41467-025-64072-z
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    References listed on IDEAS

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    1. Inmaculada Martínez-Reyes & Navdeep S. Chandel, 2020. "Mitochondrial TCA cycle metabolites control physiology and disease," Nature Communications, Nature, vol. 11(1), pages 1-11, December.
    2. Dongmei Wang & Haimin Li & Navdeep S. Chandel & Yali Dou & Rui Yi, 2023. "MOF-mediated histone H4 Lysine 16 acetylation governs mitochondrial and ciliary functions by controlling gene promoters," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
    3. Lingdi Wang & Iain Scott & Lu Zhu & Kaiyuan Wu & Kim Han & Yong Chen & Marjan Gucek & Michael N. Sack, 2017. "GCN5L1 modulates cross-talk between mitochondria and cell signaling to regulate FoxO1 stability and gluconeogenesis," Nature Communications, Nature, vol. 8(1), pages 1-11, December.
    4. Douglas Adamoski & Larissa M. dos Reis & Ana Carolina Paschoalini Mafra & Felipe Corrêa-da-Silva & Pedro Manoel Mendes de Moraes-Vieira & Ioana Berindan-Neagoe & George A. Calin & Sandra Martha Gomes , 2024. "HuR controls glutaminase RNA metabolism," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
    5. Xiongjun Wang & Ruilong Liu & Wencheng Zhu & Huiying Chu & Hua Yu & Ping Wei & Xueyuan Wu & Hongwen Zhu & Hong Gao & Ji Liang & Guohui Li & Weiwei Yang, 2019. "UDP-glucose accelerates SNAI1 mRNA decay and impairs lung cancer metastasis," Nature, Nature, vol. 571(7763), pages 127-131, July.
    6. Ashish Dhir & Somdutta Dhir & Lukasz S. Borowski & Laura Jimenez & Michael Teitell & Agnès Rötig & Yanick J. Crow & Gillian I. Rice & Darragh Duffy & Christelle Tamby & Takayuki Nojima & Arnold Munnic, 2018. "Mitochondrial double-stranded RNA triggers antiviral signalling in humans," Nature, Nature, vol. 560(7717), pages 238-242, August.
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