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Cryo-EM structure of the full-length LGR4-RSPOs complex and a targeting nanobody for anti-obesity therapy

Author

Listed:
  • Zhongyun Zhang

    (Shanghai Jiao Tong University School of Medicine
    Shanghai National Center for Translational Medicine)

  • Lu Wang

    (Chinese Academy of Sciences)

  • Huarui Qiao

    (Chinese Academy of Sciences
    University of Chinese Academy of Sciences
    Lingang Laboratory)

  • Haowen Jiang

    (Chinese Academy of Sciences)

  • Shaojue Guo

    (Chinese Academy of Sciences)

  • Yuying Li

    (Chinese Academy of Sciences)

  • Ningning Zhang

    (Shanghai Jiao Tong University School of Medicine
    Shanghai National Center for Translational Medicine)

  • Tengjie Geng

    (Chinese Academy of Sciences)

  • Qianqian Cui

    (Chinese Academy of Sciences)

  • Zhongyun Lan

    (Chinese Academy of Sciences)

  • Jie Hong

    (Shanghai Jiao Tong University School of Medicine
    Shanghai National Center for Translational Medicine)

  • Weiqiong Gu

    (Shanghai Jiao Tong University School of Medicine
    Shanghai National Center for Translational Medicine)

  • Ruixin Liu

    (Shanghai Jiao Tong University School of Medicine
    Shanghai National Center for Translational Medicine)

  • Guang Ning

    (Shanghai Jiao Tong University School of Medicine
    Shanghai National Center for Translational Medicine)

  • Jia Li

    (Chinese Academy of Sciences)

  • Jiqiu Wang

    (Shanghai Jiao Tong University School of Medicine
    Shanghai National Center for Translational Medicine)

  • Yong Geng

    (Chinese Academy of Sciences
    University of Chinese Academy of Sciences)

Abstract

Obesity poses a substantial threat to human health but lacks effective management. Recent advancements in large-scale deep sequencing and cryo-electron microscopy (cryo-EM) have transformed drug discovery paradigms. Leveraging prior genetics investigation, we pinpointed Leucine-rich repeat-containing G protein–coupled receptor 4 (LGR4) as a promising target for combating obesity. Here, we present cryo-EM structures of full-length LGR4 alone and in complex with RSPO2(FU). Notably, we develop an inhibitory nanobody (NB21) that blocks the binding of RSPO1/2 to LGR4, and we also determine the structure of the LGR4-NB21 complex. NB21-mFc (NB21 fused with mouse IgG2) effectively inhibits the canonical Wnt signaling pathway, thereby enhancing mitochondrial respiration and thermogenesis in beige adipocytes. In vivo, NB21-mFc increases energy expenditure by promoting the browning of white fat, conferring resistance to both diet-induced and genetic (ob/ob) obesity. Furthermore, LGR4 deficiency abolishes the effects of NB21-mFc in boosting the browning program and subsequent weight reduction. In summary, our study unveils structural insights into the LGR4-RSPOs and LGR4-NB21 complexes, paving the way for the development of an LGR4–targeting nanobody for weight loss.

Suggested Citation

  • Zhongyun Zhang & Lu Wang & Huarui Qiao & Haowen Jiang & Shaojue Guo & Yuying Li & Ningning Zhang & Tengjie Geng & Qianqian Cui & Zhongyun Lan & Jie Hong & Weiqiong Gu & Ruixin Liu & Guang Ning & Jia L, 2025. "Cryo-EM structure of the full-length LGR4-RSPOs complex and a targeting nanobody for anti-obesity therapy," Nature Communications, Nature, vol. 16(1), pages 1-17, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-63410-5
    DOI: 10.1038/s41467-025-63410-5
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    as
    1. Unnur Styrkarsdottir & Gudmar Thorleifsson & Patrick Sulem & Daniel F. Gudbjartsson & Asgeir Sigurdsson & Aslaug Jonasdottir & Adalbjorg Jonasdottir & Asmundur Oddsson & Agnar Helgason & Olafur T. Mag, 2013. "Nonsense mutation in the LGR4 gene is associated with several human diseases and other traits," Nature, Nature, vol. 497(7450), pages 517-520, May.
    2. Lu Wang & Fangzheng Hu & Qianqian Cui & Huarui Qiao & Lingyun Li & Tengjie Geng & Yuying Li & Zengchao Sun & Siyu Zhou & Zhongyun Lan & Shaojue Guo & Ying Hu & Jiqiu Wang & Qilun Yang & Zenan Wang & Y, 2025. "Structural insights into the LGR4-RSPO2-ZNRF3 complexes regulating WNT/β-catenin signaling," Nature Communications, Nature, vol. 16(1), pages 1-13, December.
    3. Jia Duan & Peiyu Xu & Huibing Zhang & Xiaodong Luan & Jiaqi Yang & Xinheng He & Chunyou Mao & Dan-Dan Shen & Yujie Ji & Xi Cheng & Hualiang Jiang & Yi Jiang & Shuyang Zhang & Yan Zhang & H. Eric Xu, 2023. "Mechanism of hormone and allosteric agonist mediated activation of follicle stimulating hormone receptor," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    4. Margo P. Emont & Christopher Jacobs & Adam L. Essene & Deepti Pant & Danielle Tenen & Georgia Colleluori & Angelica Vincenzo & Anja M. Jørgensen & Hesam Dashti & Adam Stefek & Elizabeth McGonagle & So, 2022. "A single-cell atlas of human and mouse white adipose tissue," Nature, Nature, vol. 603(7903), pages 926-933, March.
    5. Katerina Trajanoska & Claude Bhérer & Daniel Taliun & Sirui Zhou & J. Brent Richards & Vincent Mooser, 2023. "From target discovery to clinical drug development with human genetics," Nature, Nature, vol. 620(7975), pages 737-745, August.
    6. Josh Abramson & Jonas Adler & Jack Dunger & Richard Evans & Tim Green & Alexander Pritzel & Olaf Ronneberger & Lindsay Willmore & Andrew J. Ballard & Joshua Bambrick & Sebastian W. Bodenstein & David , 2024. "Addendum: Accurate structure prediction of biomolecular interactions with AlphaFold 3," Nature, Nature, vol. 636(8042), pages 4-4, December.
    7. Josh Abramson & Jonas Adler & Jack Dunger & Richard Evans & Tim Green & Alexander Pritzel & Olaf Ronneberger & Lindsay Willmore & Andrew J. Ballard & Joshua Bambrick & Sebastian W. Bodenstein & David , 2024. "Accurate structure prediction of biomolecular interactions with AlphaFold 3," Nature, Nature, vol. 630(8016), pages 493-500, June.
    8. Peng Liu & Yaoting Ji & Tony Yuen & Elizabeth Rendina-Ruedy & Victoria E. DeMambro & Samarth Dhawan & Wahid Abu-Amer & Sudeh Izadmehr & Bin Zhou & Andrew C. Shin & Rauf Latif & Priyanthan Thangeswaran, 2017. "Blocking FSH induces thermogenic adipose tissue and reduces body fat," Nature, Nature, vol. 546(7656), pages 107-112, June.
    9. Jia Duan & Peiyu Xu & Xiaodong Luan & Yujie Ji & Xinheng He & Ning Song & Qingning Yuan & Ye Jin & Xi Cheng & Hualiang Jiang & Jie Zheng & Shuyang Zhang & Yi Jiang & H. Eric Xu, 2022. "Hormone- and antibody-mediated activation of the thyrotropin receptor," Nature, Nature, vol. 609(7928), pages 854-859, September.
    10. Wim de Lau & Nick Barker & Teck Y. Low & Bon-Kyoung Koo & Vivian S. W. Li & Hans Teunissen & Pekka Kujala & Andrea Haegebarth & Peter J. Peters & Marc van de Wetering & D. E. Stange & J. van Es & Dani, 2011. "Lgr5 homologues associate with Wnt receptors and mediate R-spondin signalling," Nature, Nature, vol. 476(7360), pages 293-297, August.
    11. Jia Duan & Peiyu Xu & Xi Cheng & Chunyou Mao & Tristan Croll & Xinheng He & Jingjing Shi & Xiaodong Luan & Wanchao Yin & Erli You & Qiufeng Liu & Shuyang Zhang & Hualiang Jiang & Yan Zhang & Yi Jiang , 2021. "Structures of full-length glycoprotein hormone receptor signalling complexes," Nature, Nature, vol. 598(7882), pages 688-692, October.
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