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Static and transient vacuolation in protein-based coacervates induced by charged amino acids

Author

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  • Zhenhua Li

    (University of Chinese Academy of Sciences)

  • Qing Liu

    (University of Chinese Academy of Sciences)

  • Han Ding

    (University of Chinese Academy of Sciences)

  • Zhuojun Meng

    (University of Chinese Academy of Sciences)

  • Qi-Hong Zhao

    (Shanghai Jiao Tong University)

  • Nan-Nan Deng

    (Shanghai Jiao Tong University
    Shanghai Jiao Tong University Sichuan Research Institute)

  • Lifei Zheng

    (University of Chinese Academy of Sciences)

Abstract

Vacuolation is a common phenomenon observed in many subcellular membrane-less organelles, such as paraspeckles, granules and nucleoli. Previous work suggests that such dynamic sub-structuration can be a result of charge disproportion at super-stoichiometric ratios of the assembling component. In this work, we demonstrate that other than remodeling the large coacervate-constituting components, the introduction of small charged motifs, amino acids, can also lead to the formation of static vacuoles in the coacervate droplets. Furthermore, we find that transient vacuolation can be induced when the charged amino acid (L-aspartic acid) is in situ produced in the coacervate droplets. The transient vacuoles can be tuned in lifetimes and initiated repeatedly, which highly resembles the ubiquitous dissipative assemblies in living systems that require a continuous supply of energy or matter. Therefore, our work may suggest an avenue to understand the sub-structuration within subcellular membrane-less organelles.

Suggested Citation

  • Zhenhua Li & Qing Liu & Han Ding & Zhuojun Meng & Qi-Hong Zhao & Nan-Nan Deng & Lifei Zheng, 2025. "Static and transient vacuolation in protein-based coacervates induced by charged amino acids," Nature Communications, Nature, vol. 16(1), pages 1-10, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-61340-w
    DOI: 10.1038/s41467-025-61340-w
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