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Small-molecule-induced liquid-liquid phase separation suppresses the carcinogenesis of β-catenin

Author

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  • Jin Yan

    (The First Affiliated Hospital of Xi’an Jiaotong University
    The Second Affiliated Hospital of Xi’an Jiaotong University
    The Second Affiliated Hospital of Xi’an Jiaotong University)

  • Heyuan Liu

    (The Second Affiliated Hospital of Xi’an Jiaotong University
    The Second Affiliated Hospital of Xi’an Jiaotong University)

  • Wenguang Yang

    (The First Affiliated Hospital of Xi’an Jiaotong University)

  • Na Liu

    (The First Affiliated Hospital of Xi’an Jiaotong University)

  • Jingmei Wang

    (The Second Affiliated Hospital of Xi’an Jiaotong University)

  • Zhanfeng Li

    (The First Affiliated Hospital of Xi’an Jiaotong University)

  • Tianya Liu

    (The Second Affiliated Hospital of Xi’an Jiaotong University
    The Second Affiliated Hospital of Xi’an Jiaotong University)

  • Siqi Yan

    (The Second Affiliated Hospital of Xi’an Jiaotong University
    The Second Affiliated Hospital of Xi’an Jiaotong University)

  • Wangxiao He

    (The First Affiliated Hospital of Xi’an Jiaotong University
    The Second Affiliated Hospital of Xi’an Jiaotong University)

Abstract

Biomolecular condensates are droplet-like membrane-less compartments in cells that can sequester proteins. Modulating these condensates offers a promising way to durably inhibit disease-driving proteins that lack enzymatic activity and thus elude traditional drug targeting. However, many such proteins remain beyond the reach of current condensate-modulating strategies. Here we show an alternative approach: by destabilizing target proteins, we directly induce their liquid–liquid phase separation (LLPS), causing them to form condensates. Using this strategy, we develop a small molecule RQ that forces β-catenin (an oncogenic protein in liver cancer) into cytoplasmic condensates. This sequestration prevents β-catenin from entering the nucleus and activating cancer-promoting genes. In nanoparticle form (albumin-bound Abroquinone), RQ is selectively taken up by β-catenin-driven liver cancer cells and kills them while sparing normal cells. This approach suppresses β-catenin-driven tumor growth and overcomes immune evasion, demonstrating a promising paradigm for targeting previously untargetable proteins by inducing their phase separation.

Suggested Citation

  • Jin Yan & Heyuan Liu & Wenguang Yang & Na Liu & Jingmei Wang & Zhanfeng Li & Tianya Liu & Siqi Yan & Wangxiao He, 2025. "Small-molecule-induced liquid-liquid phase separation suppresses the carcinogenesis of β-catenin," Nature Communications, Nature, vol. 16(1), pages 1-16, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-61112-6
    DOI: 10.1038/s41467-025-61112-6
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    References listed on IDEAS

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    1. W. Michael Babinchak & Benjamin K. Dumm & Sarah Venus & Solomiia Boyko & Andrea A. Putnam & Eckhard Jankowsky & Witold K. Surewicz, 2020. "Small molecules as potent biphasic modulators of protein liquid-liquid phase separation," Nature Communications, Nature, vol. 11(1), pages 1-15, December.
    2. Dimitra Kerdidani & Panagiotis Chouvardas & Ares Rocanin Arjo & Ioanna Giopanou & Giannoula Ntaliarda & Yu Amanda Guo & Mary Tsikitis & Georgios Kazamias & Konstantinos Potaris & Georgios T. Stathopou, 2019. "Wnt1 silences chemokine genes in dendritic cells and induces adaptive immune resistance in lung adenocarcinoma," Nature Communications, Nature, vol. 10(1), pages 1-16, December.
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