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ELD1 mediates photoperiodic flowering via OsCCA1 alternative splicing and interacts with phytochrome signaling in rice

Author

Listed:
  • Liang Cai

    (Nanjing Agricultural University)

  • Benyuan Hao

    (Nanjing Agricultural University)

  • Zhuang Xu

    (Nanjing Agricultural University)

  • Song Cui

    (Nanjing Agricultural University)

  • Qianyun Wu

    (Nanjing Agricultural University)

  • Jiyoung Lee

    (Nanjing Agricultural University)

  • Haigang Hou

    (Nanjing Agricultural University)

  • Yuan Hu

    (Nanjing Agricultural University)

  • Liang Zhu

    (Nanjing Agricultural University)

  • Jie Wang

    (Nanjing Agricultural University)

  • Wen Li

    (Nanjing Agricultural University)

  • Kongyou Chang

    (Nanjing Agricultural University)

  • Weihao Shao

    (Nanjing Agricultural University)

  • Shanshan Zhu

    (Chinese Academy of Agricultural Sciences)

  • Xiangchao Gan

    (Nanjing Agricultural University)

  • Chao Li

    (Nanjing Agricultural University)

  • Ling Jiang

    (Nanjing Agricultural University)

  • Yunlu Tian

    (Nanjing Agricultural University)

  • Xi Liu

    (Nanjing Agricultural University)

  • Shijia Liu

    (Nanjing Agricultural University)

  • Liangming Chen

    (Nanjing Agricultural University)

  • Haiyang Wang

    (Chinese Academy of Agricultural Sciences)

  • Shirong Zhou

    (Nanjing Agricultural University)

  • Jianmin Wan

    (Nanjing Agricultural University
    Chinese Academy of Agricultural Sciences)

Abstract

Photoperiodic flowering in plants is orchestrated by the dynamic interaction between light signals and the endogenous circadian clock, but how light signals integrate into the clock remains to be fully elucidated. Here, we identify ELD1, a CCHC-type zinc finger protein that is essential for rice embryo survival. Notably, partial loss of ELD1 function results in early flowering under long-day conditions. Further investigations demonstrate that ELD1 physically interacts with OsNKAP, an orthologue of mammal NF-κB activating protein, as well as core splicing factors to regulate the splicing profile of OsCCA1, a core oscillator of the circadian clock. Molecular and genetic evidence indicate that OsCCA1 is the primary target of ELD1 in controlling flowering time. Additionally, ELD1 interacts with photoactivated phyB, mediating red-light-regulated alternative splicing of OsCCA1. Collectively, our findings establish a molecular connection between light signaling and the circadian clock, with ELD1 modulating OsCCA1 alternative splicing to control photoperiodic flowering.

Suggested Citation

  • Liang Cai & Benyuan Hao & Zhuang Xu & Song Cui & Qianyun Wu & Jiyoung Lee & Haigang Hou & Yuan Hu & Liang Zhu & Jie Wang & Wen Li & Kongyou Chang & Weihao Shao & Shanshan Zhu & Xiangchao Gan & Chao Li, 2025. "ELD1 mediates photoperiodic flowering via OsCCA1 alternative splicing and interacts with phytochrome signaling in rice," Nature Communications, Nature, vol. 16(1), pages 1-17, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-60839-6
    DOI: 10.1038/s41467-025-60839-6
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    1. Jialiang Zhang & Ruihong Bai & Mei Li & Huilin Ye & Chen Wu & Chengfeng Wang & Shengping Li & Liping Tan & Dongmei Mai & Guolin Li & Ling Pan & Yanfen Zheng & Jiachun Su & Ying Ye & Zhiqiang Fu & Shan, 2019. "Excessive miR-25-3p maturation via N6-methyladenosine stimulated by cigarette smoke promotes pancreatic cancer progression," Nature Communications, Nature, vol. 10(1), pages 1-15, December.
    2. Hua Zhou & Haiyue Zeng & Tingting Yan & Sunlu Chen & Ying Fu & Guochen Qin & Xianhai Zhao & Yueqin Heng & Jian Li & Fang Lin & Dongqing Xu & Ning Wei & Xing Wang Deng, 2024. "Light regulates nuclear detainment of intron-retained transcripts through COP1-spliceosome to modulate photomorphogenesis," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    3. Zhiwei Zhao & Craig Dent & Huafeng Liang & Junqing Lv & Guandong Shang & Yawen Liu & Fan Feng & Fei Wang & Junhong Pang & Xu Li & Libang Ma & Bing Li & Sridevi Sureshkumar & Jia-Wei Wang & Sureshkumar, 2022. "CRY2 interacts with CIS1 to regulate thermosensory flowering via FLM alternative splicing," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    4. Teng Li & Liang Chen & Juanxian Cheng & Jiang Dai & Yijiao Huang & Jian Zhang & Zhaoshan Liu & Ang Li & Na Li & Hongxia Wang & Xiaomin Yin & Kun He & Ming Yu & Tao Zhou & Xuemin Zhang & Qing Xia, 2016. "SUMOylated NKAP is essential for chromosome alignment by anchoring CENP-E to kinetochores," Nature Communications, Nature, vol. 7(1), pages 1-14, December.
    5. Jing-Fen Wu & Huang-Lung Tsai & Ignasius Joanito & Yi-Chen Wu & Chin-Wen Chang & Yi-Hang Li & Ying Wang & Jong Chan Hong & Jhih-Wei Chu & Chao-Ping Hsu & Shu-Hsing Wu, 2016. "LWD–TCP complex activates the morning gene CCA1 in Arabidopsis," Nature Communications, Nature, vol. 7(1), pages 1-10, December.
    6. Li Yang & Pengtao Liu & Xuncheng Wang & Aolin Jia & Diqiu Ren & Yaru Tang & Yaqi Tang & Xing Wang Deng & Guangming He, 2021. "A central circadian oscillator confers defense heterosis in hybrids without growth vigor costs," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
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