IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v16y2025i1d10.1038_s41467-025-60676-7.html
   My bibliography  Save this article

Imbalanced TGFβ signalling and autophagy drive erythroid priming of hematopoietic stem cells in β-thalassemia

Author

Listed:
  • Maria Rosa Lidonnici

    (IRCCS San Raffaele Scientific Institute)

  • Giulia Chianella

    (IRCCS San Raffaele Scientific Institute
    University Vita-Salute San Raffaele)

  • Nicole Mende

    (University of Cambridge)

  • Hugo P. Bastos

    (University of Cambridge)

  • Matteo Barcella

    (IRCCS San Raffaele Scientific Institute)

  • Ivan Merelli

    (National Research Council)

  • Mariangela Storto

    (IRCCS San Raffaele Scientific Institute)

  • Valentina Romeo

    (IRCCS San Raffaele Scientific Institute)

  • Francesca Tiboni

    (IRCCS San Raffaele Scientific Institute)

  • Samantha Scaramuzza

    (IRCCS San Raffaele Scientific Institute)

  • Claudia Rossi

    (IRCCS San Raffaele Scientific Institute)

  • Laura Raggi

    (IRCCS San Raffaele Scientific Institute)

  • Annamaria Aprile

    (IRCCS San Raffaele Scientific Institute)

  • Stefania Crippa

    (IRCCS San Raffaele Scientific Institute)

  • Deena Iskander

    (Imperial College London)

  • Irene Roberts

    (University of Oxford)

  • Anastasios Karamiditris

    (Imperial College London)

  • Julia Keith

    (St. Jude Children’s Research Hospital)

  • Christophe Lechauve

    (St. Jude Children’s Research Hospital)

  • Mitchell J. Weiss

    (St. Jude Children’s Research Hospital)

  • Nicola K. Wilson

    (University of Cambridge)

  • Berthold Göttgens

    (University of Cambridge)

  • Maria Ester Bernardo

    (IRCCS San Raffaele Scientific Institute
    University Vita-Salute San Raffaele
    IRCCS San Raffaele Scientific Institute
    Haematology and BMT Unit IRCCS San Raffaele Scientific Institute)

  • Fabio Ciceri

    (IRCCS San Raffaele Scientific Institute
    University Vita-Salute San Raffaele
    Haematology and BMT Unit IRCCS San Raffaele Scientific Institute)

  • Alessandro Aiuti

    (IRCCS San Raffaele Scientific Institute
    University Vita-Salute San Raffaele
    IRCCS San Raffaele Scientific Institute
    Haematology and BMT Unit IRCCS San Raffaele Scientific Institute)

  • Sarah Marktel

    (IRCCS San Raffaele Scientific Institute
    Haematology and BMT Unit IRCCS San Raffaele Scientific Institute)

  • Elisa Laurenti

    (University of Cambridge)

  • Giuliana Ferrari

    (IRCCS San Raffaele Scientific Institute
    University Vita-Salute San Raffaele)

Abstract

The hematopoietic stem cell and multipotent progenitor (HSC/MPP) pool dynamically responds to stress to adapt blood output to specific physiological demands. In β-thalassemia (Bthal), severe anemia and ineffective erythropoiesis generate expansion of erythroid precursors and a chronic stress status in the bone marrow (BM) microenvironment. However, the response to the BM altered status at the level of the HSC/MPP compartment in terms of lineage commitment has not been investigated. Bulk and single-cell RNA-sequencing reveal that Bthal HSCs/MPPs are expanded and activated with enhanced priming along the whole Ery differentiation trajectory. Consistently, HSC/MPP showed an altered TGFβ expression and autophagy transcriptional signatures along with a declined dormancy state. We discovered that the altered TGFβ signaling fosters the Ery potential of HSCs by reducing their autophagic levels, and in vivo stimulation of autophagy is sufficient to rescue the imbalance of the HSC compartment. Our findings identify the interplay between TGFβ and HSC autophagy as a key driver in the context of non-malignant hematopoiesis.

Suggested Citation

  • Maria Rosa Lidonnici & Giulia Chianella & Nicole Mende & Hugo P. Bastos & Matteo Barcella & Ivan Merelli & Mariangela Storto & Valentina Romeo & Francesca Tiboni & Samantha Scaramuzza & Claudia Rossi , 2025. "Imbalanced TGFβ signalling and autophagy drive erythroid priming of hematopoietic stem cells in β-thalassemia," Nature Communications, Nature, vol. 16(1), pages 1-19, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-60676-7
    DOI: 10.1038/s41467-025-60676-7
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-025-60676-7
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-025-60676-7?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Theodore T. Ho & Matthew R. Warr & Emmalee R. Adelman & Olivia M. Lansinger & Johanna Flach & Evgenia V. Verovskaya & Maria E. Figueroa & Emmanuelle Passegué, 2017. "Autophagy maintains the metabolism and function of young and old stem cells," Nature, Nature, vol. 543(7644), pages 205-210, March.
    2. Serena Belluschi & Emily F. Calderbank & Valerio Ciaurro & Blanca Pijuan-Sala & Antonella Santoro & Nicole Mende & Evangelia Diamanti & Kendig Yen Chi Sham & Xiaonan Wang & Winnie W. Y. Lau & Wajid Ja, 2018. "Myelo-lymphoid lineage restriction occurs in the human haematopoietic stem cell compartment before lymphoid-primed multipotent progenitors," Nature Communications, Nature, vol. 9(1), pages 1-15, December.
    3. Hector Sandoval & Perumal Thiagarajan & Swapan K. Dasgupta & Armin Schumacher & Josef T. Prchal & Min Chen & Jin Wang, 2008. "Essential role for Nix in autophagic maturation of erythroid cells," Nature, Nature, vol. 454(7201), pages 232-235, July.
    4. Megan T. Baldridge & Katherine Y. King & Nathan C. Boles & David C. Weksberg & Margaret A. Goodell, 2010. "Quiescent haematopoietic stem cells are activated by IFN-γ in response to chronic infection," Nature, Nature, vol. 465(7299), pages 793-797, June.
    5. Xuran Wang & Jihwan Park & Katalin Susztak & Nancy R. Zhang & Mingyao Li, 2019. "Bulk tissue cell type deconvolution with multi-subject single-cell expression reference," Nature Communications, Nature, vol. 10(1), pages 1-9, December.
    6. Koen Van den Berge & Hector Roux de Bézieux & Kelly Street & Wouter Saelens & Robrecht Cannoodt & Yvan Saeys & Sandrine Dudoit & Lieven Clement, 2020. "Trajectory-based differential expression analysis for single-cell sequencing data," Nature Communications, Nature, vol. 11(1), pages 1-13, December.
    7. Elisa Laurenti & Berthold Göttgens, 2018. "From haematopoietic stem cells to complex differentiation landscapes," Nature, Nature, vol. 553(7689), pages 418-426, January.
    8. Koichi Akashi & David Traver & Toshihiro Miyamoto & Irving L. Weissman, 2000. "A clonogenic common myeloid progenitor that gives rise to all myeloid lineages," Nature, Nature, vol. 404(6774), pages 193-197, March.
    9. Alejandra Sanjuan-Pla & Iain C. Macaulay & Christina T. Jensen & Petter S. Woll & Tiago C. Luis & Adam Mead & Susan Moore & Cintia Carella & Sahoko Matsuoka & Tiphaine Bouriez Jones & Onima Chowdhury , 2013. "Platelet-biased stem cells reside at the apex of the haematopoietic stem-cell hierarchy," Nature, Nature, vol. 502(7470), pages 232-236, October.
    10. Katrin Busch & Kay Klapproth & Melania Barile & Michael Flossdorf & Tim Holland-Letz & Susan M. Schlenner & Michael Reth & Thomas Höfer & Hans-Reimer Rodewald, 2015. "Fundamental properties of unperturbed haematopoiesis from stem cells in vivo," Nature, Nature, vol. 518(7540), pages 542-546, February.
    11. Betsabeh Khoramian Tusi & Samuel L. Wolock & Caleb Weinreb & Yung Hwang & Daniel Hidalgo & Rapolas Zilionis & Ari Waisman & Jun R. Huh & Allon M. Klein & Merav Socolovsky, 2018. "Population snapshots predict early haematopoietic and erythroid hierarchies," Nature, Nature, vol. 555(7694), pages 54-60, March.
    12. Joana Carrelha & Yiran Meng & Laura M. Kettyle & Tiago C. Luis & Ruggiero Norfo & Verónica Alcolea & Hanane Boukarabila & Francesca Grasso & Adriana Gambardella & Amit Grover & Kari Högstrand & Allegr, 2018. "Hierarchically related lineage-restricted fates of multipotent haematopoietic stem cells," Nature, Nature, vol. 554(7690), pages 106-111, February.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Mina N. F. Morcos & Congxin Li & Clara M. Munz & Alessandro Greco & Nicole Dressel & Susanne Reinhardt & Katrin Sameith & Andreas Dahl & Nils B. Becker & Axel Roers & Thomas Höfer & Alexander Gerbaule, 2022. "Fate mapping of hematopoietic stem cells reveals two pathways of native thrombopoiesis," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    2. Tiago C. Luis & Nikolaos Barkas & Joana Carrelha & Alice Giustacchini & Stefania Mazzi & Ruggiero Norfo & Bishan Wu & Affaf Aliouat & Jose A. Guerrero & Alba Rodriguez-Meira & Tiphaine Bouriez-Jones &, 2023. "Perivascular niche cells sense thrombocytopenia and activate hematopoietic stem cells in an IL-1 dependent manner," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
    3. Takao Yogo & Yuichiro Iwamoto & Hans Jiro Becker & Takaharu Kimura & Reiko Ishida & Ayano Sugiyama-Finnis & Tomomasa Yokomizo & Toshio Suda & Sadao Ota & Satoshi Yamazaki, 2025. "Quantitative phase imaging with temporal kinetics predicts hematopoietic stem cell diversity," Nature Communications, Nature, vol. 16(1), pages 1-14, December.
    4. Grigorios Georgolopoulos & Nikoletta Psatha & Mineo Iwata & Andrew Nishida & Tannishtha Som & Minas Yiangou & John A. Stamatoyannopoulos & Jeff Vierstra, 2021. "Discrete regulatory modules instruct hematopoietic lineage commitment and differentiation," Nature Communications, Nature, vol. 12(1), pages 1-15, December.
    5. Brandon Hadland & Barbara Varnum-Finney & Stacey Dozono & Tessa Dignum & Cynthia Nourigat-McKay & Adam M. Heck & Takashi Ishida & Dana L. Jackson & Tomer Itkin & Jason M. Butler & Shahin Rafii & Cole , 2022. "Engineering a niche supporting hematopoietic stem cell development using integrated single-cell transcriptomics," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
    6. Kiyoka Saito & Mark Garde & Terumasa Umemoto & Natsumi Miharada & Julia Sjöberg & Valgardur Sigurdsson & Haruki Shirozu & Shunsuke Kamei & Visnja Radulovic & Mitsuyoshi Suzuki & Satoshi Nakano & Stefa, 2024. "Lipoprotein metabolism mediates hematopoietic stem cell responses under acute anemic conditions," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    7. Yuxuan Liu & Zhimin Gu & Hui Cao & Pranita Kaphle & Junhua Lyu & Yuannyu Zhang & Wenhuo Hu & Stephen S. Chung & Kathryn E. Dickerson & Jian Xu, 2021. "Convergence of oncogenic cooperation at single-cell and single-gene levels drives leukemic transformation," Nature Communications, Nature, vol. 12(1), pages 1-17, December.
    8. Yu-Jung Tseng & Yuki Kageyama & Rebecca L. Murdaugh & Ayumi Kitano & Jong Hwan Kim & Kevin A. Hoegenauer & Jonathan Tiessen & Mackenzie H. Smith & Hidetaka Uryu & Koichi Takahashi & James F. Martin & , 2024. "Increased iron uptake by splenic hematopoietic stem cells promotes TET2-dependent erythroid regeneration," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    9. Jacqueline Feyen & Zhen Ping & Lanpeng Chen & Claire Dijk & Tim V. D. Tienhoven & Paulina M. H. Strien & Remco M. Hoogenboezem & Michiel J. W. Wevers & Mathijs A. Sanders & Ivo P. Touw & Marc H. G. P., 2022. "Myeloid cells promote interferon signaling-associated deterioration of the hematopoietic system," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    10. Kensuke Miyake & Junya Ito & Jun Nakabayashi & Shigeyuki Shichino & Kenji Ishiwata & Hajime Karasuyama, 2023. "Single cell transcriptomics clarifies the basophil differentiation trajectory and identifies pre-basophils upstream of mature basophils," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    11. Trent D. Hall & Hyunjin Kim & Mahmoud Dabbah & Jacquelyn A. Myers & Jeremy Chase Crawford & Antonio Morales-Hernandez & Claire E. Caprio & Pramika Sriram & Emilia Kooienga & Marta Derecka & Esther A. , 2022. "Murine fetal bone marrow does not support functional hematopoietic stem and progenitor cells until birth," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
    12. Reuben Franklin & Yiming Guo & Shiyang He & Meijuan Chen & Fei Ji & Xinyue Zhou & David Frankhouser & Brian T. Do & Carmen Chiem & Mihyun Jang & M. Andres Blanco & Matthew G. Vander Heiden & Russell C, 2022. "Regulation of chromatin accessibility by the histone chaperone CAF-1 sustains lineage fidelity," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
    13. Yinghui Li & Mei He & Wenshan Zhang & Wei Liu & Hui Xu & Ming Yang & Hexiao Zhang & Haiwei Liang & Wenjing Li & Zhaozhao Wu & Weichao Fu & Shiqi Xu & Xiaolei Liu & Sibin Fan & Liwei Zhou & Chaoqun Wan, 2023. "Expansion of human megakaryocyte-biased hematopoietic stem cells by biomimetic Microniche," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    14. Maximilian Reck & David P. Baird & Stefan Veizades & Callum Sutherland & Rachel M. B. Bell & Heeyoun Hur & Carolynn Cairns & Piotr P. Janas & Ross Campbell & Andy Nam & Wei Yang & Nathan Schurman & Cl, 2025. "Multiomic analysis of human kidney disease identifies a tractable inflammatory and pro-fibrotic tubular cell phenotype," Nature Communications, Nature, vol. 16(1), pages 1-23, December.
    15. Bin Xue & Zhengyu Xu & Lan Li & Kaiqiang Guo & Jing Mi & Haipeng Wu & Yiran Li & Chunmei Xie & Jing Jin & Juan Xu & Chunping Jiang & Xiaosong Gu & Meng Qin & Qing Jiang & Yi Cao & Wei Wang, 2025. "Hydrogels with programmed spatiotemporal mechanical cues for stem cell-assisted bone regeneration," Nature Communications, Nature, vol. 16(1), pages 1-18, December.
    16. Bárbara Andrade Barbosa & Saskia D. Asten & Ji Won Oh & Arantza Farina-Sarasqueta & Joanne Verheij & Frederike Dijk & Hanneke W. M. Laarhoven & Bauke Ylstra & Juan J. Garcia Vallejo & Mark A. Wiel & Y, 2021. "Bayesian log-normal deconvolution for enhanced in silico microdissection of bulk gene expression data," Nature Communications, Nature, vol. 12(1), pages 1-13, December.
    17. Keyong Sun & Runda Xu & Fuhai Ma & Naixue Yang & Yang Li & Xiaofeng Sun & Peng Jin & Wenzhe Kang & Lemei Jia & Jianping Xiong & Haitao Hu & Yantao Tian & Xun Lan, 2022. "scRNA-seq of gastric tumor shows complex intercellular interaction with an alternative T cell exhaustion trajectory," Nature Communications, Nature, vol. 13(1), pages 1-19, December.
    18. Jeff DeMartino & Michael T. Meister & Lindy L. Visser & Mariël Brok & Marian J. A. Groot Koerkamp & Amber K. L. Wezenaar & Laura S. Hiemcke-Jiwa & Terezinha Souza & Johannes H. M. Merks & Anne C. Rios, 2023. "Single-cell transcriptomics reveals immune suppression and cell states predictive of patient outcomes in rhabdomyosarcoma," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    19. Cheng-Wei Chang & Wei-Chung Cheng & Chaang-Ray Chen & Wun-Yi Shu & Min-Lung Tsai & Ching-Lung Huang & Ian C Hsu, 2011. "Identification of Human Housekeeping Genes and Tissue-Selective Genes by Microarray Meta-Analysis," PLOS ONE, Public Library of Science, vol. 6(7), pages 1-10, July.
    20. Chang Su & Zichun Xu & Xinning Shan & Biao Cai & Hongyu Zhao & Jingfei Zhang, 2023. "Cell-type-specific co-expression inference from single cell RNA-sequencing data," Nature Communications, Nature, vol. 14(1), pages 1-12, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-60676-7. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.