IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v16y2025i1d10.1038_s41467-025-60321-3.html
   My bibliography  Save this article

Polymerised superparamagnetic antigen presenting cell lymphocyte capture for enriching tumour reactive T-cells and neoantigen identification

Author

Listed:
  • Chung-Yao Hsu

    (National Yang Ming Chao Tung University and Academia Sinica
    Academia Sinica)

  • Po-Cheng Tsai

    (National Yang Ming Chao Tung University and Academia Sinica
    Academia Sinica)

  • Jung-Chen Lin

    (Academia Sinica
    National Yang Ming Chiao Tung University
    National Yang Ming Chiao Tung University
    National Yang Ming Chiao Tung University)

  • Chen-Hsueh Pai

    (Academia Sinica)

  • Yun-Jui Teng

    (National Taiwan University)

  • Bing-Yu Yao

    (Academia Sinica)

  • Cheng-Yin Fei

    (National Yang Ming Chao Tung University and Academia Sinica
    Academia Sinica)

  • Gwo Harn Max Shiau

    (Academia Sinica)

  • Leon CW Lin

    (Academia Sinica)

  • Sean Lo

    (Academia Sinica)

  • Hung-Chih Yang

    (National Taiwan University)

  • Che-Ming Jack Hu

    (National Yang Ming Chao Tung University and Academia Sinica
    Academia Sinica
    National Cheng Kung University)

Abstract

Ultrasensitive antigen recognition between T lymphocytes and cognate targets via immunological synapse (IS) formation enables live cell-based antigen-specific T cell detection. However, unpredictable antigen processing and major histocompatibility complex (MHC) turnover limit specificity. Here, intracellularly polymerized antigen-presenting cells (pAPCs) are developed for modular, persistent antigen display via kinetically driven loading. Although inanimate, pAPCs mimic cellular interactions, inducing IS hallmarks such as supramolecular activation cluster formation, cytoskeletal contraction, and trogocytosis. Incorporation of superparamagnetic nanoparticles allows label-free magnetic isolation of antigen-specific T cells, surpassing MHC-conjugated beads in sensitivity and specificity. In tumor-bearing hosts, pAPCs enrich tumor-reactive lymphocytes, enhancing adoptive T cell therapy and neoantigen-specific T cell identification. Additionally, pAPCs from engineered cells expressing monovalent human MHC enrich virus- and tumor-specific CD8 T cells from human peripheral blood mononuclear cells and human leukocyte antigen-transgenic mice, demonstrating the potential of this cell–gel hybrid platform for precise antigen-specific T cell capture.

Suggested Citation

  • Chung-Yao Hsu & Po-Cheng Tsai & Jung-Chen Lin & Chen-Hsueh Pai & Yun-Jui Teng & Bing-Yu Yao & Cheng-Yin Fei & Gwo Harn Max Shiau & Leon CW Lin & Sean Lo & Hung-Chih Yang & Che-Ming Jack Hu, 2025. "Polymerised superparamagnetic antigen presenting cell lymphocyte capture for enriching tumour reactive T-cells and neoantigen identification," Nature Communications, Nature, vol. 16(1), pages 1-16, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-60321-3
    DOI: 10.1038/s41467-025-60321-3
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-025-60321-3
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-025-60321-3?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Mahesh Yadav & Suchit Jhunjhunwala & Qui T. Phung & Patrick Lupardus & Joshua Tanguay & Stephanie Bumbaca & Christian Franci & Tommy K. Cheung & Jens Fritsche & Toni Weinschenk & Zora Modrusan & Ira M, 2014. "Predicting immunogenic tumour mutations by combining mass spectrometry and exome sequencing," Nature, Nature, vol. 515(7528), pages 572-576, November.
    2. Susan P. Foy & Kyle Jacoby & Daniela A. Bota & Theresa Hunter & Zheng Pan & Eric Stawiski & Yan Ma & William Lu & Songming Peng & Clifford L. Wang & Benjamin Yuen & Olivier Dalmas & Katharine Heeringa, 2023. "Non-viral precision T cell receptor replacement for personalized cell therapy," Nature, Nature, vol. 615(7953), pages 687-696, March.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Mehwish Iftikhar & Muhammad Imran Qureshi & Shazia Qayyum & Iram Fatima & Sriyanto Sriyanto & Yasinta Indrianti & Aqeel Khan & Leo-Paul Dana, 2021. "Impact of Multifaceted Workplace Bullying on the Relationships between Technology Usage, Organisational Climate and Employee Physical and Emotional Health," IJERPH, MDPI, vol. 18(6), pages 1-19, March.
    2. Sara Orehek & Taja Železnik Ramuta & Duško Lainšček & Špela Malenšek & Martin Šala & Mojca Benčina & Roman Jerala & Iva Hafner-Bratkovič, 2024. "Cytokine-armed pyroptosis induces antitumor immunity against diverse types of tumors," Nature Communications, Nature, vol. 15(1), pages 1-22, December.
    3. Judit Svensson-Arvelund & Sara Cuadrado-Castano & Gvantsa Pantsulaia & Kristy Kim & Mark Aleynick & Linda Hammerich & Ranjan Upadhyay & Michael Yellin & Henry Marsh & Daniel Oreper & Suchit Jhunjhunwa, 2022. "Expanding cross-presenting dendritic cells enhances oncolytic virotherapy and is critical for long-term anti-tumor immunity," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
    4. Jennifer G. Abelin & Erik J. Bergstrom & Keith D. Rivera & Hannah B. Taylor & Susan Klaeger & Charles Xu & Eva K. Verzani & C. Jackson White & Hilina B. Woldemichael & Maya Virshup & Meagan E. Olive &, 2023. "Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues," Nature Communications, Nature, vol. 14(1), pages 1-22, December.
    5. Jens Bauer & Natalie Köhler & Yacine Maringer & Philip Bucher & Tatjana Bilich & Melissa Zwick & Severin Dicks & Annika Nelde & Marissa Dubbelaar & Jonas Scheid & Marcel Wacker & Jonas S. Heitmann & S, 2022. "The oncogenic fusion protein DNAJB1-PRKACA can be specifically targeted by peptide-based immunotherapy in fibrolamellar hepatocellular carcinoma," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    6. William John Thrift & Nicolas W. Lounsbury & Quade Broadwell & Amy Heidersbach & Emily Freund & Yassan Abdolazimi & Qui T. Phung & Jieming Chen & Aude-Hélène Capietto & Ann-Jay Tong & Christopher M. R, 2024. "Towards designing improved cancer immunotherapy targets with a peptide-MHC-I presentation model, HLApollo," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    7. Ashish Goyal & Jens Bauer & Joschka Hey & Dimitris N. Papageorgiou & Ekaterina Stepanova & Michael Daskalakis & Jonas Scheid & Marissa Dubbelaar & Boris Klimovich & Dominic Schwarz & Melanie Märklin &, 2023. "DNMT and HDAC inhibition induces immunogenic neoantigens from human endogenous retroviral element-derived transcripts," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
    8. Zhen Lu & Jinyun Chen & Pengfei Yu & Matthew J. Atherton & Jun Gui & Vivek S. Tomar & Justin D. Middleton & Neil T. Sullivan & Sunil Singhal & Subin S. George & Ashley G. Woolfork & Aalim M. Weljie & , 2022. "Tumor factors stimulate lysosomal degradation of tumor antigens and undermine their cross-presentation in lung cancer," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
    9. Mingming Zhao & Xiaohui Cheng & Pingwen Shao & Yao Dong & Yongjie Wu & Lin Xiao & Zhiying Cui & Xuedi Sun & Chuancheng Gao & Jiangning Chen & Zhen Huang & Junfeng Zhang, 2024. "Bacterial protoplast-derived nanovesicles carrying CRISPR-Cas9 tools re-educate tumor-associated macrophages for enhanced cancer immunotherapy," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
    10. Naomi Hoenisch Gravel & Annika Nelde & Jens Bauer & Lena Mühlenbruch & Sarah M. Schroeder & Marian C. Neidert & Jonas Scheid & Steffen Lemke & Marissa L. Dubbelaar & Marcel Wacker & Anna Dengler & Rei, 2023. "TOFIMS mass spectrometry-based immunopeptidomics refines tumor antigen identification," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    11. Aman Mebrahtu & Ida Laurén & Rosanne Veerman & Gözde Güclüler Akpinar & Martin Lord & Alexandros Kostakis & Juan Astorga-Wells & Leif Dahllund & Anders Olsson & Oscar Andersson & Jonathan Persson & He, 2024. "A bispecific CD40 agonistic antibody allowing for antibody-peptide conjugate formation to enable cancer-specific peptide delivery, resulting in improved T Cell proliferation and anti-tumor immunity in," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
    12. Jiefei Han & Yiting Dong & Xiuli Zhu & Alexandre Reuben & Jianjun Zhang & Jiachen Xu & Hua Bai & Jianchun Duan & Rui Wan & Jie Zhao & Jing Bai & Xuefeng Xia & Xin Yi & Chao Cheng & Jie Wang & Zhijie W, 2024. "Assessment of human leukocyte antigen-based neoantigen presentation to determine pan-cancer response to immunotherapy," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    13. Derin Sevenler & Mehmet Toner, 2024. "High throughput intracellular delivery by viscoelastic mechanoporation," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    14. Nandini Pal Basak & Kowshik Jaganathan & Biswajit Das & Oliyarasi Muthusamy & Rajashekar M & Ritu Malhotra & Amit Samal & Moumita Nath & Ganesh MS & Amritha Prabha Shankar & Prakash BV & Vijay Pillai , 2024. "Tumor histoculture captures the dynamic interactions between tumor and immune components in response to anti-PD1 in head and neck cancer," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    15. Thomas Kuilman & Deborah S. Schrikkema & Jules Gadiot & Raquel Gomez-Eerland & Laura Bies & Julia Walker & Robbert M. Spaapen & Hanna Kok & Demi Houg & Milena Viyacheva & Yvonne B. Claassen & Manuel S, 2025. "Enabling next-generation engineered TCR-T therapies based on high-throughput TCR discovery from diagnostic tumor biopsies," Nature Communications, Nature, vol. 16(1), pages 1-14, December.
    16. Hakimeh Ebrahimi-Nik & Marmar Moussa & Ryan P. Englander & Summit Singhaviranon & Justine Michaux & HuiSong Pak & Hiroko Miyadera & William L. Corwin & Grant L. J. Keller & Adam T. Hagymasi & Tatiana , 2021. "Reversion analysis reveals the in vivo immunogenicity of a poorly MHC I-binding cancer neoepitope," Nature Communications, Nature, vol. 12(1), pages 1-11, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-60321-3. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.