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Let-7 restrains an epigenetic circuit in AT2 cells to prevent fibrogenic intermediates in pulmonary fibrosis

Author

Listed:
  • Matthew J. Seasock

    (Baylor College of Medicine
    Baylor College of Medicine)

  • Md Shafiquzzaman

    (Baylor College of Medicine)

  • Maria E. Ruiz-Echartea

    (Baylor College of Medicine)

  • Rupa S. Kanchi

    (Baylor College of Medicine
    Baylor College of Medicine)

  • Brandon T. Tran

    (Baylor College of Medicine
    Baylor College of Medicine)

  • Lukas M. Simon

    (Baylor College of Medicine)

  • Matthew D. Meyer

    (Rice University)

  • Phillip A. Erice

    (Baylor College of Medicine
    Baylor College of Medicine)

  • Shivani L. Lotlikar

    (Baylor College of Medicine)

  • Stephanie C. Wenlock

    (University of Cambridge)

  • Scott A. Ochsner

    (Baylor College of Medicine)

  • Anton Enright

    (University of Cambridge)

  • Alex F. Carisey

    (Texas Children’s Hospital
    St. Jude Children’s Research Hospital)

  • Freddy Romero

    (Baylor College of Medicine
    3215 Merryfield Row)

  • Ivan O. Rosas

    (Baylor College of Medicine)

  • Katherine Y. King

    (Baylor College of Medicine)

  • Neil J. McKenna

    (Baylor College of Medicine)

  • Cristian Coarfa

    (Baylor College of Medicine
    Baylor College of Medicine)

  • Antony Rodriguez

    (Baylor College of Medicine
    Baylor College of Medicine
    Baylor College of Medicine)

Abstract

MicroRNA-mediated post-transcriptional regulation of lung alveolar type 2 (AT2) and AT1 cell differentiation remains understudied. Here, we demonstrate that the let-7 miRNA family plays a homeostatic role in AT2 quiescence by preventing the uncontrolled accumulation of AT2 transitional cells and promoting AT1 differentiation. Using mouse and organoid models, we show that genetic ablation of let-7a1/let-7f1/let-7d cluster (let-7afd) in AT2 cells prevents AT1 differentiation and leads to KRT8 transitional cell accumulation in progressive pulmonary fibrosis. Integration of AGO2-eCLIP with RNA-sequencing identified direct let-7 targets within an oncogene feed-forward regulatory network, including BACH1/EZH2/MYC, which drives an aberrant fibrotic cascade. Additional CUT&RUN-sequencing analyses revealed that let-7afd loss disrupts histone acetylation and methylation, driving epigenetic reprogramming and altered gene transcription in profibrotic AT2 cells. This study identifies let-7 as a central hub linking unchecked oncogenic signaling to impaired AT2 cell plasticity and fibrogenesis.

Suggested Citation

  • Matthew J. Seasock & Md Shafiquzzaman & Maria E. Ruiz-Echartea & Rupa S. Kanchi & Brandon T. Tran & Lukas M. Simon & Matthew D. Meyer & Phillip A. Erice & Shivani L. Lotlikar & Stephanie C. Wenlock & , 2025. "Let-7 restrains an epigenetic circuit in AT2 cells to prevent fibrogenic intermediates in pulmonary fibrosis," Nature Communications, Nature, vol. 16(1), pages 1-20, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-59641-1
    DOI: 10.1038/s41467-025-59641-1
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