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Rare genetic variants impact muscle strength

Author

Listed:
  • Yunfeng Huang

    (Biogen Inc.)

  • Dora Bodnar

    (Biogen Inc.)

  • Chia-Yen Chen

    (Biogen Inc.)

  • Gabriela Sanchez-Andrade

    (Wellcome Sanger Institute)

  • Mark Sanderson

    (Wellcome Sanger Institute)

  • Jun Shi

    (Biogen Inc.)

  • Katherine G. Meilleur

    (Biogen Inc.)

  • Matthew E. Hurles

    (Wellcome Sanger Institute)

  • Sebastian S. Gerety

    (Wellcome Sanger Institute)

  • Ellen A. Tsai

    (Biogen Inc.)

  • Heiko Runz

    (Biogen Inc.)

Abstract

Muscle strength is highly heritable and predictive for multiple adverse health outcomes including mortality. Here, we present a rare protein-coding variant association study in 340,319 individuals for hand grip strength, a proxy measure of muscle strength. We show that the exome-wide burden of rare protein-truncating and damaging missense variants is associated with a reduction in hand grip strength. We identify six significant hand grip strength genes, KDM5B, OBSCN, GIGYF1, TTN, RB1CC1, and EIF3J. In the example of the titin (TTN) locus we demonstrate a convergence of rare with common variant association signals and uncover genetic relationships between reduced hand grip strength and disease. Finally, we identify shared mechanisms between brain and muscle function and uncover additive effects between rare and common genetic variation on muscle strength.

Suggested Citation

  • Yunfeng Huang & Dora Bodnar & Chia-Yen Chen & Gabriela Sanchez-Andrade & Mark Sanderson & Jun Shi & Katherine G. Meilleur & Matthew E. Hurles & Sebastian S. Gerety & Ellen A. Tsai & Heiko Runz, 2023. "Rare genetic variants impact muscle strength," Nature Communications, Nature, vol. 14(1), pages 1-8, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-39247-1
    DOI: 10.1038/s41467-023-39247-1
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    References listed on IDEAS

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    1. Tian Ge & Chia-Yen Chen & Yang Ni & Yen-Chen Anne Feng & Jordan W. Smoller, 2019. "Polygenic prediction via Bayesian regression and continuous shrinkage priors," Nature Communications, Nature, vol. 10(1), pages 1-10, December.
    2. Quanli Wang & Ryan S. Dhindsa & Keren Carss & Andrew R. Harper & Abhishek Nag & Ioanna Tachmazidou & Dimitrios Vitsios & Sri V. V. Deevi & Alex Mackay & Daniel Muthas & Michael Hühn & Susan Monkley & , 2021. "Rare variant contribution to human disease in 281,104 UK Biobank exomes," Nature, Nature, vol. 597(7877), pages 527-532, September.
    3. Sara M. Willems & Daniel J. Wright & Felix R. Day & Katerina Trajanoska & Peter K. Joshi & John A. Morris & Amy M. Matteini & Fleur C. Garton & Niels Grarup & Nikolay Oskolkov & Anbupalam Thalamuthu &, 2017. "Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness," Nature Communications, Nature, vol. 8(1), pages 1-12, December.
    4. Monkol Lek & Konrad J. Karczewski & Eric V. Minikel & Kaitlin E. Samocha & Eric Banks & Timothy Fennell & Anne H. O’Donnell-Luria & James S. Ware & Andrew J. Hill & Beryl B. Cummings & Taru Tukiainen , 2016. "Analysis of protein-coding genetic variation in 60,706 humans," Nature, Nature, vol. 536(7616), pages 285-291, August.
    5. Christiaan A de Leeuw & Joris M Mooij & Tom Heskes & Danielle Posthuma, 2015. "MAGMA: Generalized Gene-Set Analysis of GWAS Data," PLOS Computational Biology, Public Library of Science, vol. 11(4), pages 1-19, April.
    6. Gao Wang & Abhishek Sarkar & Peter Carbonetto & Matthew Stephens, 2020. "A simple new approach to variable selection in regression, with application to genetic fine mapping," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 82(5), pages 1273-1300, December.
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