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Contributions of replicative and translesion DNA polymerases to mutagenic bypass of canonical and atypical UV photoproducts

Author

Listed:
  • Brittany N. Vandenberg

    (Washington State University)

  • Marian F. Laughery

    (Washington State University)

  • Cameron Cordero

    (Washington State University)

  • Dalton Plummer

    (Washington State University)

  • Debra Mitchell

    (Washington State University)

  • Jordan Kreyenhagen

    (Washington State University)

  • Fatimah Albaqshi

    (Washington State University)

  • Alexander J. Brown

    (Washington State University)

  • Piotr A. Mieczkowski

    (University of North Carolina)

  • John J. Wyrick

    (Washington State University)

  • Steven A. Roberts

    (Washington State University)

Abstract

UV exposure induces a mutation signature of C > T substitutions at dipyrimidines in skin cancers. We recently identified additional UV-induced AC > TT and A > T substitutions that could respectively cause BRAF V600K and V600E oncogenic mutations. The mutagenic bypass mechanism past these atypical lesions, however, is unknown. Here, we whole genome sequenced UV-irradiated yeast and used reversion reporters to delineate the roles of replicative and translesion DNA polymerases in mutagenic bypass of UV-lesions. Our data indicates that yeast DNA polymerase eta (pol η) has varied impact on UV-induced mutations: protecting against C > T substitutions, promoting T > C and AC > TT substitutions, and not impacting A > T substitutions. Surprisingly, deletion rad30Δ increased novel UV-induced C > A substitutions at CA dinucleotides. In contrast, DNA polymerases zeta (pol ζ) and epsilon (pol ε) participated in AC > TT and A > T mutations. These results uncover lesion-specific accurate and mutagenic bypass of UV lesions, which likely contribute to key driver mutations in melanoma.

Suggested Citation

  • Brittany N. Vandenberg & Marian F. Laughery & Cameron Cordero & Dalton Plummer & Debra Mitchell & Jordan Kreyenhagen & Fatimah Albaqshi & Alexander J. Brown & Piotr A. Mieczkowski & John J. Wyrick & S, 2023. "Contributions of replicative and translesion DNA polymerases to mutagenic bypass of canonical and atypical UV photoproducts," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-38255-5
    DOI: 10.1038/s41467-023-38255-5
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    1. Chikahide Masutani & Rika Kusumoto & Ayumi Yamada & Naoshi Dohmae & Masayuki Yokoi & Mayumi Yuasa & Marito Araki & Shigenori Iwai & Koji Takio & Fumio Hanaoka, 1999. "The XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase η," Nature, Nature, vol. 399(6737), pages 700-704, June.
    2. Namrata Kumar & Arjan F. Theil & Vera Roginskaya & Yasmin Ali & Michael Calderon & Simon C. Watkins & Ryan P. Barnes & Patricia L. Opresko & Alex Pines & Hannes Lans & Wim Vermeulen & Bennett Houten, 2022. "Global and transcription-coupled repair of 8-oxoG is initiated by nucleotide excision repair proteins," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    3. Jingwu Xie & Maximilien Murone & Shiuh-Ming Luoh & Anne Ryan & Qimin Gu & Chaohui Zhang & Jeannette M. Bonifas & Ching-Wan Lam & Mary Hynes & Audrey Goddard & Arnon Rosenthal & Ervin H Epstein & Frede, 1998. "Activating Smoothened mutations in sporadic basal-cell carcinoma," Nature, Nature, vol. 391(6662), pages 90-92, January.
    4. Nicholas K. Hayward & James S. Wilmott & Nicola Waddell & Peter A. Johansson & Matthew A. Field & Katia Nones & Ann-Marie Patch & Hojabr Kakavand & Ludmil B. Alexandrov & Hazel Burke & Valerie Jakrot , 2017. "Whole-genome landscapes of major melanoma subtypes," Nature, Nature, vol. 545(7653), pages 175-180, May.
    5. Ludmil B. Alexandrov & Serena Nik-Zainal & David C. Wedge & Samuel A. J. R. Aparicio & Sam Behjati & Andrew V. Biankin & Graham R. Bignell & Niccolò Bolli & Ake Borg & Anne-Lise Børresen-Dale & Sandri, 2013. "Correction: Corrigendum: Signatures of mutational processes in human cancer," Nature, Nature, vol. 502(7470), pages 258-258, October.
    6. Ludmil B. Alexandrov & Serena Nik-Zainal & David C. Wedge & Samuel A. J. R. Aparicio & Sam Behjati & Andrew V. Biankin & Graham R. Bignell & Niccolò Bolli & Ake Borg & Anne-Lise Børresen-Dale & Sandri, 2013. "Signatures of mutational processes in human cancer," Nature, Nature, vol. 500(7463), pages 415-421, August.
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