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Omicron-specific mRNA vaccination alone and as a heterologous booster against SARS-CoV-2

Author

Listed:
  • Zhenhao Fang

    (Yale University School of Medicine
    Yale University
    Yale University)

  • Lei Peng

    (Yale University School of Medicine
    Yale University
    Yale University)

  • Renata Filler

    (Yale University
    Yale University)

  • Kazushi Suzuki

    (Yale University School of Medicine
    Yale University
    Yale University)

  • Andrew McNamara

    (Yale University
    Yale University)

  • Qianqian Lin

    (Yale University School of Medicine
    Yale University
    Yale University)

  • Paul A. Renauer

    (Yale University School of Medicine
    Yale University
    Yale University
    Yale University)

  • Luojia Yang

    (Yale University School of Medicine
    Yale University
    Yale University
    Yale University)

  • Bridget Menasche

    (Yale University
    Yale University
    Yale University)

  • Angie Sanchez

    (Yale University School of Medicine
    Yale University
    Yale University
    Yale College)

  • Ping Ren

    (Yale University School of Medicine
    Yale University
    Yale University)

  • Qiancheng Xiong

    (Yale University
    Yale University)

  • Madison Strine

    (Yale University
    Yale University
    Yale University)

  • Paul Clark

    (Yale University School of Medicine
    Yale University
    Yale University)

  • Chenxiang Lin

    (Yale University
    Yale University
    Yale University)

  • Albert I. Ko

    (Yale School of Public Health
    Yale University School of Medicine)

  • Nathan D. Grubaugh

    (Yale School of Public Health
    Yale University)

  • Craig B. Wilen

    (Yale University
    Yale University
    Yale University)

  • Sidi Chen

    (Yale University School of Medicine
    Yale University
    Yale University
    Yale University)

Abstract

The Omicron variant of SARS-CoV-2 recently swept the globe and showed high level of immune evasion. Here, we generate an Omicron-specific lipid nanoparticle (LNP) mRNA vaccine candidate, and test its activity in animals, both alone and as a heterologous booster to WT mRNA vaccine. Our Omicron-specific LNP-mRNA vaccine elicits strong antibody response in vaccination-naïve mice. Mice that received two-dose WT LNP-mRNA show a > 40-fold reduction in neutralization potency against Omicron than WT two weeks post boost, which further reduce to background level after 3 months. The WT or Omicron LNP-mRNA booster increases the waning antibody response of WT LNP-mRNA vaccinated mice against Omicron by 40 fold at two weeks post injection. Interestingly, the heterologous Omicron booster elicits neutralizing titers 10-20 fold higher than the homologous WT booster against Omicron variant, with comparable titers against Delta variant. All three types of vaccination, including Omicron alone, WT booster and Omicron booster, elicit broad binding antibody responses against SARS-CoV-2 WA-1, Beta, Delta variants and SARS-CoV. These data provide direct assessments of an Omicron-specific mRNA vaccination in vivo, both alone and as a heterologous booster to WT mRNA vaccine.

Suggested Citation

  • Zhenhao Fang & Lei Peng & Renata Filler & Kazushi Suzuki & Andrew McNamara & Qianqian Lin & Paul A. Renauer & Luojia Yang & Bridget Menasche & Angie Sanchez & Ping Ren & Qiancheng Xiong & Madison Stri, 2022. "Omicron-specific mRNA vaccination alone and as a heterologous booster against SARS-CoV-2," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-30878-4
    DOI: 10.1038/s41467-022-30878-4
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    References listed on IDEAS

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    1. Carolina Lucas & Chantal B. F. Vogels & Inci Yildirim & Jessica E. Rothman & Peiwen Lu & Valter Monteiro & Jeff R. Gehlhausen & Melissa Campbell & Julio Silva & Alexandra Tabachnikova & Mario A. Peña-, 2021. "Impact of circulating SARS-CoV-2 variants on mRNA vaccine-induced immunity," Nature, Nature, vol. 600(7889), pages 523-529, December.
    2. Raquel Viana & Sikhulile Moyo & Daniel G. Amoako & Houriiyah Tegally & Cathrine Scheepers & Christian L. Althaus & Ugochukwu J. Anyaneji & Phillip A. Bester & Maciej F. Boni & Mohammed Chand & Wonderf, 2022. "Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa," Nature, Nature, vol. 603(7902), pages 679-686, March.
    3. Christopher O. Barnes & Claudia A. Jette & Morgan E. Abernathy & Kim-Marie A. Dam & Shannon R. Esswein & Harry B. Gristick & Andrey G. Malyutin & Naima G. Sharaf & Kathryn E. Huey-Tubman & Yu E. Lee &, 2020. "SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies," Nature, Nature, vol. 588(7839), pages 682-687, December.
    4. Lihong Liu & Pengfei Wang & Manoj S. Nair & Jian Yu & Micah Rapp & Qian Wang & Yang Luo & Jasper F.-W. Chan & Vincent Sahi & Amir Figueroa & Xinzheng V. Guo & Gabriele Cerutti & Jude Bimela & Jason Go, 2020. "Potent neutralizing antibodies against multiple epitopes on SARS-CoV-2 spike," Nature, Nature, vol. 584(7821), pages 450-456, August.
    5. Kizzmekia S. Corbett & Darin K. Edwards & Sarah R. Leist & Olubukola M. Abiona & Seyhan Boyoglu-Barnum & Rebecca A. Gillespie & Sunny Himansu & Alexandra Schäfer & Cynthia T. Ziwawo & Anthony T. DiPia, 2020. "SARS-CoV-2 mRNA vaccine design enabled by prototype pathogen preparedness," Nature, Nature, vol. 586(7830), pages 567-571, October.
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