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Metagenome-wide association of gut microbiome features for schizophrenia

Author

Listed:
  • Feng Zhu

    (The First Affiliated Hospital of Xi’an Jiaotong University)

  • Yanmei Ju

    (BGI-Shenzhen
    China National Genebank
    Shenzhen Key Laboratory of Human Commensal Microorganisms and Health Research, BGI-Shenzhen
    University of Chinese Academy of Sciences)

  • Wei Wang

    (The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University)

  • Qi Wang

    (BGI-Shenzhen
    University of Chinese Academy of Sciences)

  • Ruijin Guo

    (BGI-Shenzhen
    China National Genebank
    Shenzhen Key Laboratory of Human Commensal Microorganisms and Health Research, BGI-Shenzhen
    Macau University of Science and Technology, Taipa)

  • Qingyan Ma

    (The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University)

  • Qiang Sun

    (BGI-Shenzhen
    University of Toronto)

  • Yajuan Fan

    (The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University)

  • Yuying Xie

    (Michigan State University)

  • Zai Yang

    (The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University)

  • Zhuye Jie

    (BGI-Shenzhen
    China National Genebank
    Shenzhen Key Laboratory of Human Commensal Microorganisms and Health Research, BGI-Shenzhen)

  • Binbin Zhao

    (The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University)

  • Liang Xiao

    (BGI-Shenzhen
    China National Genebank
    Shenzhen Engineering Laboratory of Detection and Intervention of Human Intestinal Microbiome, BGI-Shenzhen)

  • Lin Yang

    (The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University)

  • Tao Zhang

    (BGI-Shenzhen
    China National Genebank
    Shenzhen Key Laboratory of Cognition and Gene Research, BGI-Shenzhen)

  • Junqin Feng

    (The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University)

  • Liyang Guo

    (The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University)

  • Xiaoyan He

    (The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University)

  • Yunchun Chen

    (The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University)

  • Ce Chen

    (The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University)

  • Chengge Gao

    (The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University)

  • Xun Xu

    (BGI-Shenzhen
    China National Genebank)

  • Huanming Yang

    (BGI-Shenzhen
    James D. Watson Institute of Genome Sciences)

  • Jian Wang

    (BGI-Shenzhen
    James D. Watson Institute of Genome Sciences)

  • Yonghui Dang

    (Xi’an Jiaotong University)

  • Lise Madsen

    (BGI-Shenzhen
    Institute of Marine Research (IMR)
    University of Copenhagen)

  • Susanne Brix

    (BGI-Shenzhen
    Technical University of Denmark)

  • Karsten Kristiansen

    (BGI-Shenzhen
    University of Copenhagen)

  • Huijue Jia

    (BGI-Shenzhen
    China National Genebank
    Shenzhen Key Laboratory of Human Commensal Microorganisms and Health Research, BGI-Shenzhen
    Macau University of Science and Technology, Taipa)

  • Xiancang Ma

    (The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University
    The First Affiliated Hospital of Xi’an Jiaotong University)

Abstract

Evidence is mounting that the gut-brain axis plays an important role in mental diseases fueling mechanistic investigations to provide a basis for future targeted interventions. However, shotgun metagenomic data from treatment-naïve patients are scarce hampering comprehensive analyses of the complex interaction between the gut microbiota and the brain. Here we explore the fecal microbiome based on 90 medication-free schizophrenia patients and 81 controls and identify a microbial species classifier distinguishing patients from controls with an area under the receiver operating characteristic curve (AUC) of 0.896, and replicate the microbiome-based disease classifier in 45 patients and 45 controls (AUC = 0.765). Functional potentials associated with schizophrenia include differences in short-chain fatty acids synthesis, tryptophan metabolism, and synthesis/degradation of neurotransmitters. Transplantation of a schizophrenia-enriched bacterium, Streptococcus vestibularis, appear to induces deficits in social behaviors, and alters neurotransmitter levels in peripheral tissues in recipient mice. Our findings provide new leads for further investigations in cohort studies and animal models.

Suggested Citation

  • Feng Zhu & Yanmei Ju & Wei Wang & Qi Wang & Ruijin Guo & Qingyan Ma & Qiang Sun & Yajuan Fan & Yuying Xie & Zai Yang & Zhuye Jie & Binbin Zhao & Liang Xiao & Lin Yang & Tao Zhang & Junqin Feng & Liyan, 2020. "Metagenome-wide association of gut microbiome features for schizophrenia," Nature Communications, Nature, vol. 11(1), pages 1-10, December.
  • Handle: RePEc:nat:natcom:v:11:y:2020:i:1:d:10.1038_s41467-020-15457-9
    DOI: 10.1038/s41467-020-15457-9
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    Cited by:

    1. Jean-Sebastien Gounot & Minghao Chia & Denis Bertrand & Woei-Yuh Saw & Aarthi Ravikrishnan & Adrian Low & Yichen Ding & Amanda Hui Qi Ng & Linda Wei Lin Tan & Yik-Ying Teo & Henning Seedorf & Niranjan, 2022. "Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    2. Martin Stocker & Claus Klingenberg & Lars Navér & Viveka Nordberg & Alberto Berardi & Salhab el Helou & Gerhard Fusch & Joseph M. Bliss & Dirk Lehnick & Varvara Dimopoulou & Nicholas Guerina & Joanna , 2023. "Less is more: Antibiotics at the beginning of life," Nature Communications, Nature, vol. 14(1), pages 1-9, December.

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