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Profile of Bacterial Community and Antibiotic Resistance Genes in Typical Vegetable Greenhouse Soil

Author

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  • Xuexia Yuan

    (Institute of Agricultural Standards and Testing Technology for Agri-Products, Shandong Academy of Agricultural Sciences & Shandong Provincial Key Laboratory of Test Technology on Food Quality and Safety, Jinan 250100, China)

  • Yong Zhang

    (Shandong Provincial Land Surveying and Planning Institute, Jinan 250014, China)

  • Chenxi Sun

    (Institute of Agricultural Standards and Testing Technology for Agri-Products, Shandong Academy of Agricultural Sciences & Shandong Provincial Key Laboratory of Test Technology on Food Quality and Safety, Jinan 250100, China)

  • Wenbo Wang

    (Institute of Agricultural Standards and Testing Technology for Agri-Products, Shandong Academy of Agricultural Sciences & Shandong Provincial Key Laboratory of Test Technology on Food Quality and Safety, Jinan 250100, China)

  • Yuanjuan Wu

    (Institute of Agricultural Standards and Testing Technology for Agri-Products, Shandong Academy of Agricultural Sciences & Shandong Provincial Key Laboratory of Test Technology on Food Quality and Safety, Jinan 250100, China)

  • Lixia Fan

    (Institute of Agricultural Standards and Testing Technology for Agri-Products, Shandong Academy of Agricultural Sciences & Shandong Provincial Key Laboratory of Test Technology on Food Quality and Safety, Jinan 250100, China)

  • Bing Liu

    (Resources and Environment Innovation Institute, School of Municipal and Environmental Engineering, Shandong Jianzhu University, Jinan 250101, China)

Abstract

The use of vegetable greenhouse production systems has increased rapidly because of the increasing demand for food materials. The vegetable greenhouse production industry is confronted with serious environmental problems, due to their high agrochemical inputs and intensive utilization. Besides this, antibiotic-resistant bacteria, carrying antibiotic-resistance genes (ARGs), may enter into a vegetable greenhouse with the application of animal manure. Bacterial communities and ARGs were investigated in two typical vegetable-greenhouse-using counties with long histories of vegetable cultivation. The results showed that Proteobacteria , Firmicutes , Acidobacteria , Chloroflexi , and Gemmatimonadetes were the dominant phyla, while aadA , tetL , sul1 , and sul2 were the most common ARGs in greenhouse vegetable soil. Heatmap and principal coordinate analysis (PCoA) demonstrated that the differences between two counties were more significant than those among soils with different cultivation histories in the same county, suggesting that more effects on bacterial communities and ARGs were caused by soil type and manure type than by the accumulation of cultivation years. The positive correlation between the abundance of the intI gene with specific ARGs highlights the horizontal transfer potential of these ARGs. A total of 11 phyla were identified as the potential hosts of specific ARGs. Based on redundancy analysis (RDA), Ni and pH were the most potent factors determining the bacterial communities, and Cr was the top factor affecting the relative abundance of the ARGs. These results might be helpful in drawing more attention to the risk of manure recycling in the vegetable greenhouse, and further developing a strategy for practical manure application and sustainable production of vegetable greenhouses.

Suggested Citation

  • Xuexia Yuan & Yong Zhang & Chenxi Sun & Wenbo Wang & Yuanjuan Wu & Lixia Fan & Bing Liu, 2022. "Profile of Bacterial Community and Antibiotic Resistance Genes in Typical Vegetable Greenhouse Soil," IJERPH, MDPI, vol. 19(13), pages 1-15, June.
    • Handle: RePEc:gam:jijerp:v:19:y:2022:i:13:p:7742-:d:846644
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    References listed on IDEAS

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    1. Shu-chun Tseng & Chih-ming Liang & Taipau Chia & Shan-shin Ton, 2021. "Changes in the Composition of the Soil Bacterial Community in Heavy Metal-Contaminated Farmland," IJERPH, MDPI, vol. 18(16), pages 1-15, August.
    2. Xiaojuan Wang & Jie Gu & Hua Gao & Xun Qian & Haichao Li, 2018. "Abundances of Clinically Relevant Antibiotic Resistance Genes and Bacterial Community Diversity in the Weihe River, China," IJERPH, MDPI, vol. 15(4), pages 1-14, April.
    3. Amarachukwu Obayiuwana & Adeniyi Ogunjobi & Min Yang & Mark Ibekwe, 2018. "Characterization of Bacterial Communities and Their Antibiotic Resistance Profiles in Wastewaters Obtained from Pharmaceutical Facilities in Lagos and Ogun States, Nigeria," IJERPH, MDPI, vol. 15(7), pages 1-14, June.
    4. Abdullah Kaviani Rad & Angelika Astaykina & Rostislav Streletskii & Yeganeh Afsharyzad & Hassan Etesami & Mehdi Zarei & Siva K. Balasundram, 2022. "An Overview of Antibiotic Resistance and Abiotic Stresses Affecting Antimicrobial Resistance in Agricultural Soils," IJERPH, MDPI, vol. 19(8), pages 1-27, April.
    5. Bingbing Du & Qingxiang Yang & Ruifei Wang & Ruimin Wang & Qiang Wang & Yuan Xin, 2019. "Evolution of Antibiotic Resistance and the Relationship between the Antibiotic Resistance Genes and Microbial Compositions under Long-Term Exposure to Tetracycline and Sulfamethoxazole," IJERPH, MDPI, vol. 16(23), pages 1-15, November.
    6. Ana María Sánchez-Baena & Luz Dary Caicedo-Bejarano & Mónica Chávez-Vivas, 2021. "Structure of Bacterial Community with Resistance to Antibiotics in Aquatic Environments. A Systematic Review," IJERPH, MDPI, vol. 18(5), pages 1-20, February.
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    Cited by:

    1. Wioleta Bolesta & Marcin Głodniok & Katarzyna Styszko, 2022. "From Sewage Sludge to the Soil—Transfer of Pharmaceuticals: A Review," IJERPH, MDPI, vol. 19(16), pages 1-15, August.

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