IDEAS home Printed from https://ideas.repec.org/a/gam/jagris/v13y2023i2p252-d1042440.html
   My bibliography  Save this article

Genome-Wide Identification of BTB Domain-Containing Gene Family in Grapevine ( Vitis vinifera L.)

Author

Listed:
  • Nandni Goyal

    (Department of Biotechnology, BMS Block I, Panjab University, Sector 25, Chandigarh 160014, India)

  • Monika Bhuria

    (Department of Biotechnology, BMS Block I, Panjab University, Sector 25, Chandigarh 160014, India)

  • Deepika Verma

    (Department of Biotechnology, BMS Block I, Panjab University, Sector 25, Chandigarh 160014, India)

  • Naina Garewal

    (Department of Biotechnology, BMS Block I, Panjab University, Sector 25, Chandigarh 160014, India)

  • Kashmir Singh

    (Department of Biotechnology, BMS Block I, Panjab University, Sector 25, Chandigarh 160014, India)

Abstract

BTB (broad-complex, tram track and bric-a-brac) proteins have broad functions in different growth processes and biotic and abiotic stresses. However, the biological role of these proteins has not yet been explored in grapevine, which draws our attention towards the BTB gene family. Herein, we identified 69 BTB genes ( VvBTB ) in the Vitis vinifera genome and performed comprehensive in silico analysis. Phylogenetic analysis classified VvBTB proteins into five groups, and further domain analysis revealed the presence of other additional functional domains. The majority of BTB proteins were localized in the nucleus. We also performed differential expression analysis by harnessing RNA- seq data of 10 developmental stages and different biotic and abiotic stresses. Our findings revealed the plausible roles of the BTB gene family in developmental stages; Fifty VvBTB were differentially expressed at different developmental stages. In addition, 47 and 16 VvBTB were responsive towards abiotic and biotic stresses, respectively. Interestingly, 13 VvBTB genes exhibited differential expression in at least one of the developmental stages and biotic and abiotic stresses. Further, miRNA target prediction of 13 VvBTB genes revealed that vvi-miR482 targets VvBTB56, and multiple miRNAs, such as vvi-miR172, vvi-miR169 and vvi-miR399, target VvBTB24, which provides an insight into the essential role of the BTB family in the grapevine. Our study provides the first comprehensive analysis and essential information that can potentially be used for further functional investigation of BTB genes in this economically important fruit crop.

Suggested Citation

  • Nandni Goyal & Monika Bhuria & Deepika Verma & Naina Garewal & Kashmir Singh, 2023. "Genome-Wide Identification of BTB Domain-Containing Gene Family in Grapevine ( Vitis vinifera L.)," Agriculture, MDPI, vol. 13(2), pages 1-19, January.
    • Handle: RePEc:gam:jagris:v:13:y:2023:i:2:p:252-:d:1042440
    as

    Download full text from publisher

    File URL: https://www.mdpi.com/2077-0472/13/2/252/pdf
    Download Restriction: no
    File URL: https://www.mdpi.com/2077-0472/13/2/252/
    Download Restriction: no
    ---><---

    References listed on IDEAS

    as
    1. Shivesh Kumar & Raul Zavaliev & Qinglin Wu & Ye Zhou & Jie Cheng & Lucas Dillard & Jordan Powers & John Withers & Jinshi Zhao & Ziqiang Guan & Mario J. Borgnia & Alberto Bartesaghi & Xinnian Dong & Pe, 2022. "Structural basis of NPR1 in activating plant immunity," Nature, Nature, vol. 605(7910), pages 561-566, May.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Jiahui Liu & Xiaoyun Wu & Yue Fang & Ye Liu & Esther Oreofe Bello & Yong Li & Ruyi Xiong & Yinzi Li & Zheng Qing Fu & Aiming Wang & Xiaofei Cheng, 2023. "A plant RNA virus inhibits NPR1 sumoylation and subverts NPR1-mediated plant immunity," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    2. Zhengying Luo & Xin Hu & Zhuandi Wu & Xinlong Liu & Caiwen Wu & Qianchun Zeng, 2022. "Identification and Expression Profiling of TGA Transcription Factor Genes in Sugarcane Reveals the Roles in Response to Sporisorium scitamineum Infection," Agriculture, MDPI, vol. 12(10), pages 1-15, October.
    3. Kai Qiao & Weiyi Huang & Xuemei Li & Jiahui Liang & Hong Cai, 2023. "Combined Transcriptomic and Metabolomic Analyses of Defense Mechanisms against Phytoplasma Infection in Camptotheca acuminata Decne," Agriculture, MDPI, vol. 13(10), pages 1-20, October.
    4. Hehong Zhang & Fengmin Wang & Weiqi Song & Zihang Yang & Lulu Li & Qiang Ma & Xiaoxiang Tan & Zhongyan Wei & Yanjun Li & Junmin Li & Fei Yan & Jianping Chen & Zongtao Sun, 2023. "Different viral effectors suppress hormone-mediated antiviral immunity of rice coordinated by OsNPR1," Nature Communications, Nature, vol. 14(1), pages 1-17, December.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:gam:jagris:v:13:y:2023:i:2:p:252-:d:1042440. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: MDPI Indexing Manager (email available below). General contact details of provider: https://www.mdpi.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.