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Exploring nonlinearity to identify genes and intergenic regions in genomes

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  • Tsonis, Anastasios A.
  • Tsonis, Panagiotis A.

Abstract

In a previous paper (Physica A 312 (2002) 458) we presented an analysis, which established that DNA sequences exhibit significant nonlinear structure. More specifically, we found that both coding and non-coding sequences exhibit nonlinearity, but coding sequences are more nonlinear than non-coding sequences. Here, we extend this result and we propose an approach which explores nonlinearity to predict genes and intergenic regions in sequenced genomes. Our results compare favorably to other commonly used approaches in this problem.

Suggested Citation

  • Tsonis, Anastasios A. & Tsonis, Panagiotis A., 2005. "Exploring nonlinearity to identify genes and intergenic regions in genomes," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 348(C), pages 339-348.
  • Handle: RePEc:eee:phsmap:v:348:y:2005:i:c:p:339-348
    DOI: 10.1016/j.physa.2004.10.002
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    References listed on IDEAS

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    1. Tsonis, Anastasios A & Heller, Fred L & Tsonis, Panagiotis A, 2002. "Probing the linearity and nonlinearity in DNA sequences," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 312(3), pages 458-468.
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