Author
Abstract
Many proteins exhibit a sharp maximum in the heat capacity as a function of temperature as a result of the denaturation process. We have recently shown that the temperature dependence of the heat capacity can be converted into a finite set of moments of the enthalpy distribution for the protein. Using the maximum-entropy method one can then use these moments to construct approximations to the enthalpy distribution function, the more moments used the better the approximation. We find that for many proteins the enthalpy distribution is bimodal when one expands the heat capacity in the neighborhood of the maximum in this function reflecting the presence of two distinctly different populations of molecules. In the present paper we analyze a soluble model system to test the accuracy of the approximate distribution functions obtained from the maximum-entropy method using a finite set of moments. For this purpose we pick the two-dimensional Ising model near the critical point, treating finite patches of lattice sites. In the finite system there is no true phase transition, but there is a sharp change in density and enthalpy in the neighborhood of the critical point. The distribution functions for the Ising model are in fact very similar to those for proteins. For the Ising model, we can then compare the exact distribution functions with those calculated using a finite number of moments and the maximum-entropy method and we find that the latter give excellent agreement with the exact results thus lending credibility to similar results obtained for distribution functions describing protein denaturation.
Suggested Citation
Poland, Douglas, 2002.
"Distribution functions in Ising patches: a test case for protein denaturation,"
Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 309(1), pages 45-68.
Handle:
RePEc:eee:phsmap:v:309:y:2002:i:1:p:45-68
DOI: 10.1016/S0378-4371(02)00612-X
Download full text from publisher
As the access to this document is restricted, you may want to
for a different version of it.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:phsmap:v:309:y:2002:i:1:p:45-68. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
We have no bibliographic references for this item. You can help adding them by using this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.journals.elsevier.com/physica-a-statistical-mechpplications/ .
Please note that corrections may take a couple of weeks to filter through
the various RePEc services.