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Entropy analysis in yeast DNA

Author

Listed:
  • Kim, Jongkwang
  • Kim, Sowun
  • Lee, Kunsang
  • Kwon, Younghun

Abstract

In this article, we investigate the language structure in yeast 16 chromosomes. In order to find it, we use the entropy analysis for codons (or amino acids) of yeast 16 chromosomes, developed in analysis of natural language by Montemurro et al. From the analysis, we can see that there exists a language structure in codons (or amino acids) of yeast 16 chromosomes. Also we find that the grammar structure of amino acids of yeast 16 chromosomes has a deep relationship with secondary structure of protein.

Suggested Citation

  • Kim, Jongkwang & Kim, Sowun & Lee, Kunsang & Kwon, Younghun, 2009. "Entropy analysis in yeast DNA," Chaos, Solitons & Fractals, Elsevier, vol. 39(4), pages 1565-1571.
    • Handle: RePEc:eee:chsofr:v:39:y:2009:i:4:p:1565-1571
    DOI: 10.1016/j.chaos.2007.06.036
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    References listed on IDEAS

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    1. Kim, J.K. & Yang, S.I. & Kwon, Y.H. & Lee, E.I., 2005. "Codon and amino-acid distribution in DNA," Chaos, Solitons & Fractals, Elsevier, vol. 23(5), pages 1795-1807.
    2. Bhan, Jaemi & Kim, Sowoon & Kim, Jongkwang & Kwon, Younghun & Yang, Sung-il & Lee, Kunsang, 2006. "Long-range correlations in Korean literary corpora," Chaos, Solitons & Fractals, Elsevier, vol. 29(1), pages 69-81.
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