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Improved classi cation for compositional data using the $\alpha$-transformation

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  • Tsagris, Michail
  • Preston, Simon
  • T.A. Wood, Andrew

Abstract

In compositional data analysis an observation is a vector containing non-negative values, only the relative sizes of which are considered to be of interest. Without loss of generality, a compositional vector can be taken to be a vector of proportions that sum to one. Data of this type arise in many areas including geology, archaeology, biology, economics and political science. In this paper we investigate methods for classi�cation of compositional data. Our approach centres on the idea of using the �-transformation to transform the data and then to classify the transformed data via regularised discriminant analysis and the k-nearest neighbours algorithm. Using the �-transformation generalises two rival approaches in compositional data analysis, one (when α=1) that treats the data as though they were Euclidean, ignoring the compositional constraint, and another (when $\alpha$ = 0) that employs Aitchison's centred log-ratio transformation. A numerical study with several real datasets shows that whether using $\alpha$ = 1 or $\alpha$ = 0 gives better classification performance depends on the dataset, and moreover that using an intermediate value of α can sometimes give better performance than using either 1 or 0.

Suggested Citation

  • Tsagris, Michail & Preston, Simon & T.A. Wood, Andrew, 2016. "Improved classi cation for compositional data using the $\alpha$-transformation," MPRA Paper 67657, University Library of Munich, Germany.
  • Handle: RePEc:pra:mprapa:67657
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    References listed on IDEAS

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    Cited by:

    1. Yannis Pantazis & Michail Tsagris & Andrew T. A. Wood, 2019. "Gaussian Asymptotic Limits for the α-transformation in the Analysis of Compositional Data," Sankhya A: The Indian Journal of Statistics, Springer;Indian Statistical Institute, vol. 81(1), pages 63-82, February.
    2. Wang,Dieter & Andree,Bo Pieter Johannes & Chamorro Elizondo,Andres Fernando & Spencer,Phoebe Girouard, 2020. "Stochastic Modeling of Food Insecurity," Policy Research Working Paper Series 9413, The World Bank.
    3. Wang, Dieter & Andrée, Bo Pieter Johannes & Chamorro, Andres Fernando & Spencer, Phoebe Girouard, 2022. "Transitions into and out of food insecurity: A probabilistic approach with panel data evidence from 15 countries," World Development, Elsevier, vol. 159(C).

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    More about this item

    Keywords

    compositional data; classi�cation; �-transformation; �-metric; Jensen-Shannon divergence;
    All these keywords.

    JEL classification:

    • C18 - Mathematical and Quantitative Methods - - Econometric and Statistical Methods and Methodology: General - - - Methodolical Issues: General

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