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A human judgment approach to epidemiological forecasting

Author

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  • David C Farrow
  • Logan C Brooks
  • Sangwon Hyun
  • Ryan J Tibshirani
  • Donald S Burke
  • Roni Rosenfeld

Abstract

Infectious diseases impose considerable burden on society, despite significant advances in technology and medicine over the past century. Advanced warning can be helpful in mitigating and preparing for an impending or ongoing epidemic. Historically, such a capability has lagged for many reasons, including in particular the uncertainty in the current state of the system and in the understanding of the processes that drive epidemic trajectories. Presently we have access to data, models, and computational resources that enable the development of epidemiological forecasting systems. Indeed, several recent challenges hosted by the U.S. government have fostered an open and collaborative environment for the development of these technologies. The primary focus of these challenges has been to develop statistical and computational methods for epidemiological forecasting, but here we consider a serious alternative based on collective human judgment. We created the web-based “Epicast” forecasting system which collects and aggregates epidemic predictions made in real-time by human participants, and with these forecasts we ask two questions: how accurate is human judgment, and how do these forecasts compare to their more computational, data-driven alternatives? To address the former, we assess by a variety of metrics how accurately humans are able to predict influenza and chikungunya trajectories. As for the latter, we show that real-time, combined human predictions of the 2014–2015 and 2015–2016 U.S. flu seasons are often more accurate than the same predictions made by several statistical systems, especially for short-term targets. We conclude that there is valuable predictive power in collective human judgment, and we discuss the benefits and drawbacks of this approach.Author summary: Despite advanced and widely accessible health care, a large number of annual deaths in the United States are attributable to infectious diseases like influenza. Many of these cases could be easily prevented if sufficiently advanced warning was available. This is the main goal of epidemiological forecasting, a relatively new field that attempts to predict when and where disease outbreaks will occur. In response to growing interest in this endeavor, many forecasting frameworks have been developed for a variety of diseases. We ask whether an approach based on collective human judgment can be used to produce reasonable forecasts and how such forecasts compare with forecasts produced by purely data-driven systems. To answer this, we collected simple predictions in real-time from a set of expert and non-expert volunteers during the 2014–2015 and 2015–2016 U.S. flu seasons and during the 2014–2015 chikungunya invasion of Central America, and we report several measures of accuracy based on these predictions. By comparing these predictions with published forecasts of data-driven methods, we build an intuition for the difficulty of the task and learn that there is real value in collective human judgment.

Suggested Citation

  • David C Farrow & Logan C Brooks & Sangwon Hyun & Ryan J Tibshirani & Donald S Burke & Roni Rosenfeld, 2017. "A human judgment approach to epidemiological forecasting," PLOS Computational Biology, Public Library of Science, vol. 13(3), pages 1-19, March.
  • Handle: RePEc:plo:pcbi00:1005248
    DOI: 10.1371/journal.pcbi.1005248
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    References listed on IDEAS

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    1. Logan C Brooks & David C Farrow & Sangwon Hyun & Ryan J Tibshirani & Roni Rosenfeld, 2015. "Flexible Modeling of Epidemics with an Empirical Bayes Framework," PLOS Computational Biology, Public Library of Science, vol. 11(8), pages 1-18, August.
    2. Norman Dalkey & Olaf Helmer, 1963. "An Experimental Application of the DELPHI Method to the Use of Experts," Management Science, INFORMS, vol. 9(3), pages 458-467, April.
    3. Alan D. Lopez & Colin D. Mathers & Majid Ezzati & Dean T. Jamison & Christopher J. L. Murray, 2006. "Global Burden of Disease and Risk Factors," World Bank Publications - Books, The World Bank Group, number 7039, December.
    4. Smolinski, M.S. & Crawley, A.W. & Baltrusaitis, K. & Chunara, R. & Olsen, J.M. & Wójcik, O. & Santillana, M. & Nguyen, A. & Brownstein, J.S., 2015. "Flu near you: Crowdsourced symptom reporting spanning 2 influenza seasons," American Journal of Public Health, American Public Health Association, vol. 105(10), pages 2124-2130.
    5. Vanessa Racloz & Rebecca Ramsey & Shilu Tong & Wenbiao Hu, 2012. "Surveillance of Dengue Fever Virus: A Review of Epidemiological Models and Early Warning Systems," PLOS Neglected Tropical Diseases, Public Library of Science, vol. 6(5), pages 1-9, May.
    6. Jean-Paul Chretien & Dylan George & Jeffrey Shaman & Rohit A Chitale & F Ellis McKenzie, 2014. "Influenza Forecasting in Human Populations: A Scoping Review," PLOS ONE, Public Library of Science, vol. 9(4), pages 1-8, April.
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    Cited by:

    1. Petropoulos, Fotios & Makridakis, Spyros & Stylianou, Neophytos, 2022. "COVID-19: Forecasting confirmed cases and deaths with a simple time series model," International Journal of Forecasting, Elsevier, vol. 38(2), pages 439-452.
    2. Sarah C Kramer & Sen Pei & Jeffrey Shaman, 2020. "Forecasting influenza in Europe using a metapopulation model incorporating cross-border commuting and air travel," PLOS Computational Biology, Public Library of Science, vol. 16(10), pages 1-21, October.
    3. Sen Pei & Jeffrey Shaman, 2020. "Aggregating forecasts of multiple respiratory pathogens supports more accurate forecasting of influenza-like illness," PLOS Computational Biology, Public Library of Science, vol. 16(10), pages 1-19, October.
    4. Logan C Brooks & David C Farrow & Sangwon Hyun & Ryan J Tibshirani & Roni Rosenfeld, 2018. "Nonmechanistic forecasts of seasonal influenza with iterative one-week-ahead distributions," PLOS Computational Biology, Public Library of Science, vol. 14(6), pages 1-29, June.
    5. Nicholas G Reich & Craig J McGowan & Teresa K Yamana & Abhinav Tushar & Evan L Ray & Dave Osthus & Sasikiran Kandula & Logan C Brooks & Willow Crawford-Crudell & Graham Casey Gibson & Evan Moore & Reb, 2019. "Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S," PLOS Computational Biology, Public Library of Science, vol. 15(11), pages 1-19, November.
    6. Michael S Deiner & Lee Worden & Alex Rittel & Sarah F Ackley & Fengchen Liu & Laura Blum & James C Scott & Thomas M Lietman & Travis C Porco, 2017. "Short-term leprosy forecasting from an expert opinion survey," PLOS ONE, Public Library of Science, vol. 12(8), pages 1-13, August.

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