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RSKC: An R Package for a Robust and Sparse K-Means Clustering Algorithm

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  • Kondo, Yumi
  • Salibian-Barrera, Matias
  • Zamar, Ruben

Abstract

Witten and Tibshirani (2010) proposed an algorithim to simultaneously find clusters and select clustering variables, called sparse K-means (SK-means). SK-means is particularly useful when the dataset has a large fraction of noise variables (that is, variables without useful information to separate the clusters). SK-means works very well on clean and complete data but cannot handle outliers nor missing data. To remedy these problems we introduce a new robust and sparse K-means clustering algorithm implemented in the R package RSKC. We demonstrate the use of our package on four datasets. We also conduct a Monte Carlo study to compare the performances of RSK-means and SK-means regarding the selection of important variables and identification of clusters. Our simulation study shows that RSK-means performs well on clean data and better than SK-means and other competitors on outlier-contaminated data.

Suggested Citation

  • Kondo, Yumi & Salibian-Barrera, Matias & Zamar, Ruben, 2016. "RSKC: An R Package for a Robust and Sparse K-Means Clustering Algorithm," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 72(i05).
    • Handle: RePEc:jss:jstsof:v:072:i05
    DOI: http://hdl.handle.net/10.18637/jss.v072.i05
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    References listed on IDEAS

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    1. Sugar, Catherine A. & James, Gareth M., 2003. "Finding the Number of Clusters in a Dataset: An Information-Theoretic Approach," Journal of the American Statistical Association, American Statistical Association, vol. 98, pages 750-763, January.
    2. Glenn Milligan & Martha Cooper, 1985. "An examination of procedures for determining the number of clusters in a data set," Psychometrika, Springer;The Psychometric Society, vol. 50(2), pages 159-179, June.
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    Cited by:

    1. Šárka Brodinová & Peter Filzmoser & Thomas Ortner & Christian Breiteneder & Maia Rohm, 2019. "Robust and sparse k-means clustering for high-dimensional data," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 13(4), pages 905-932, December.
    2. Rana Muhammad Adnan & Kulwinder Singh Parmar & Salim Heddam & Shamsuddin Shahid & Ozgur Kisi, 2021. "Suspended Sediment Modeling Using a Heuristic Regression Method Hybridized with Kmeans Clustering," Sustainability, MDPI, vol. 13(9), pages 1-21, April.

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