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Formulating State Space Models in R with Focus on Longitudinal Regression Models

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  • Dethlefsen, Claus
  • Lundbye-Christensen, Søren

Abstract

We provide a language for formulating a range of state space models with response densities within the exponential family. The described methodology is implemented in the R-package sspir. A state space model is specified similarly to a generalized linear model in R, and then the time-varying terms are marked in the formula. Special functions for specifying polynomial time trends, harmonic seasonal patterns, unstructured seasonal patterns and time-varying covariates can be used in the formula. The model is fitted to data using iterated extended Kalman filtering, but the formulation of models does not depend on the implemented method of inference. The package is demonstrated on three datasets.

Suggested Citation

  • Dethlefsen, Claus & Lundbye-Christensen, Søren, 2006. "Formulating State Space Models in R with Focus on Longitudinal Regression Models," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 16(i01).
    • Handle: RePEc:jss:jstsof:v:016:i01
    DOI: http://hdl.handle.net/10.18637/jss.v016.i01
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    References listed on IDEAS

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    1. J. Durbin & S. J. Koopman, 2000. "Time series analysis of non‐Gaussian observations based on state space models from both classical and Bayesian perspectives," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 62(1), pages 3-56.
    2. Siem Jan Koopman & Neil Shephard & Jurgen A. Doornik, 1999. "Statistical algorithms for models in state space using SsfPack 2.2," Econometrics Journal, Royal Economic Society, vol. 2(1), pages 107-160.
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    Cited by:

    1. Dani Gamerman & Thiago Rezende Santos & Glaura C. Franco, 2013. "A Non-Gaussian Family Of State-Space Models With Exact Marginal Likelihood," Journal of Time Series Analysis, Wiley Blackwell, vol. 34(6), pages 625-645, November.
    2. repec:jss:jstsof:41:i04 is not listed on IDEAS
    3. Cabral, Celso Rômulo Barbosa & da-Silva, Cibele Queiroz & Migon, Helio S., 2014. "A dynamic linear model with extended skew-normal for the initial distribution of the state parameter," Computational Statistics & Data Analysis, Elsevier, vol. 74(C), pages 64-80.
    4. Ruiz-Cárdenas, Ramiro & Krainski, Elias T. & Rue, Håvard, 2012. "Direct fitting of dynamic models using integrated nested Laplace approximations — INLA," Computational Statistics & Data Analysis, Elsevier, vol. 56(6), pages 1808-1828.
    5. repec:jss:jstsof:39:i02 is not listed on IDEAS

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