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Transferability of species distribution models: The case of Phytophthora cinnamomi in Southwest Spain and Southwest Australia

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  • Duque-Lazo, J.
  • van Gils, H.
  • Groen, T.A.
  • Navarro-Cerrillo, R.M.

Abstract

Species distribution models (SDMs) predict the probability of species occurrence based on their statistical relationships with environmental variables. Many studies have compared SDM algorithms and accuracies, but few have compared transferability of SDMs across disjunctive geographic areas and the impact of the number of variables on their performance and transferability. We compared the predictive power and transferability of ten SDM algorithms using Phytophthora cinnamomi point locations. P. cinnamomi Rands is an oomycete associated with Oak Decline in Spain and Jarrah Dieback in Australia. The environmental similarity between the two areas was assessed using Mahalanobis distances. Model performance was evaluated by area under the curve (AUC). The spatial distribution of P. cinnamomi was predicted satisfactorily (AUC>0.7) in Spain by nine algorithms, but only marginally (AUC>0.55) by all except one in Australia. Further, three machine-learning methods showed relatively high predictive power in the calibration areas combined with low transferability to the other continent, while two of the five regression models achieved reasonable accuracies within the calibration areas combined with a better intercontinental transferability compared to machine-learning methods. The SDM algorithms generated diverse responses to using less than five environmental variables. The most desirable combinations of model performance and transferability were achieved by General Linear Models (GLM) and Generalized Additive Models (GAM). MaxEnt performed at par with GLM and GAM in-situ as well as in transferring for one of the two directions. Moreover, MaxEnt provided the most robust response across the number of environmental variables tested.

Suggested Citation

  • Duque-Lazo, J. & van Gils, H. & Groen, T.A. & Navarro-Cerrillo, R.M., 2016. "Transferability of species distribution models: The case of Phytophthora cinnamomi in Southwest Spain and Southwest Australia," Ecological Modelling, Elsevier, vol. 320(C), pages 62-70.
  • Handle: RePEc:eee:ecomod:v:320:y:2016:i:c:p:62-70
    DOI: 10.1016/j.ecolmodel.2015.09.019
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    2. Leandro, Camila & Jay-Robert, Pierre & Mériguet, Bruno & Houard, Xavier & Renner, Ian W., 2020. "Is my sdm good enough? insights from a citizen science dataset in a point process modeling framework," Ecological Modelling, Elsevier, vol. 438(C).
    3. Semmens, Darius J. & Sherrouse, Benson C. & Ancona, Zach H., 2019. "Using social-context matching to improve spatial function-transfer performance for cultural ecosystem service models," Ecosystem Services, Elsevier, vol. 38(C), pages 1-1.
    4. Rotllan-Puig, Xavier & Traveset, Anna, 2021. "Determining the minimal background area for species distribution models: MinBAR package," Ecological Modelling, Elsevier, vol. 439(C).
    5. Muhammad Abdul Hakim Muhamad & Rozaimi Che Hasan & Najhan Md Said & Jillian Lean-Sim Ooi, 2021. "Seagrass habitat suitability model for Redang Marine Park using multibeam echosounder data: Testing different spatial resolutions and analysis window sizes," PLOS ONE, Public Library of Science, vol. 16(9), pages 1-26, September.
    6. Sutton, G.F. & Martin, G.D., 2022. "Testing MaxEnt model performance in a novel geographic region using an intentionally introduced insect," Ecological Modelling, Elsevier, vol. 473(C).
    7. Coppée, Thomas & Paquet, Jean-Yves & Titeux, Nicolas & Dufrêne, Marc, 2022. "Temporal transferability of species abundance models to study the changes of breeding bird species based on land cover changes," Ecological Modelling, Elsevier, vol. 473(C).

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