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Fast online deconvolution of calcium imaging data

Citations

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Cited by:

  1. Luis M. Franco & Michael J. Goard, 2024. "Differential stability of task variable representations in retrosplenial cortex," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
  2. Sean Jewell & Paul Fearnhead & Daniela Witten, 2022. "Testing for a change in mean after changepoint detection," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 84(4), pages 1082-1104, September.
  3. Matt Udakis & Matthew D. B. Claydon & Heng Wei Zhu & Elsa C. Oakes & Jack R. Mellor, 2025. "Hippocampal OLM interneurons regulate CA1 place cell plasticity and remapping," Nature Communications, Nature, vol. 16(1), pages 1-16, December.
  4. Ignacio Alonso & Irina Scheer & Mélanie Palacio-Manzano & Noémie Frézel-Jacob & Antoine Philippides & Mario Prsa, 2023. "Peripersonal encoding of forelimb proprioception in the mouse somatosensory cortex," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
  5. Mitchell Clough & Ichun Anderson Chen & Seong-Wook Park & Allison M. Ahrens & Jeffrey N. Stirman & Spencer L. Smith & Jerry L. Chen, 2021. "Flexible simultaneous mesoscale two-photon imaging of neural activity at high speeds," Nature Communications, Nature, vol. 12(1), pages 1-7, December.
  6. Daniel U Campos-Delgado & Omar Gutierrez-Navarro & Ricardo Salinas-Martinez & Elvis Duran & Aldo R Mejia-Rodriguez & Miguel J Velazquez-Duran & Javier A Jo, 2021. "Blind deconvolution estimation by multi-exponential models and alternated least squares approximations: Free-form and sparse approach," PLOS ONE, Public Library of Science, vol. 16(3), pages 1-29, March.
  7. Nicholas A Rondoni & Fan Lu & Daniel B Turner-Evans & Marcella Gomez, 2025. "Predicting neuronal firing from calcium imaging using a control theoretic approach," PLOS Computational Biology, Public Library of Science, vol. 21(6), pages 1-18, June.
  8. Sudiksha Sridhar & Eric Lowet & Howard J. Gritton & Jennifer Freire & Chengqian Zhou & Florence Liang & Xue Han, 2024. "Beta-frequency sensory stimulation enhances gait rhythmicity through strengthened coupling between striatal networks and stepping movement," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
  9. Kyerl Park & Yoonsoo Yeo & Kisung Shin & Jeehyun Kwag, 2024. "Egocentric neural representation of geometric vertex in the retrosplenial cortex," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
  10. Sasa Teng & Fenghua Zhen & Li Wang & Jose Canovas Schalchli & Jane Simko & Xinyue Chen & Hao Jin & Christopher D. Makinson & Yueqing Peng, 2022. "Control of non-REM sleep by ventrolateral medulla glutamatergic neurons projecting to the preoptic area," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
  11. Penghe Zhang & Naihua Xiu & Ziyan Luo, 2024. "Zero-One Composite Optimization: Lyapunov Exact Penalty and a Globally Convergent Inexact Augmented Lagrangian Method," Mathematics of Operations Research, INFORMS, vol. 49(4), pages 2602-2625, November.
  12. Shinichiro Kira & Houman Safaai & Ari S. Morcos & Stefano Panzeri & Christopher D. Harvey, 2023. "A distributed and efficient population code of mixed selectivity neurons for flexible navigation decisions," Nature Communications, Nature, vol. 14(1), pages 1-28, December.
  13. Pieter M. Goltstein & David Laubender & Tobias Bonhoeffer & Mark Hübener, 2025. "A column-like organization for ocular dominance in mouse visual cortex," Nature Communications, Nature, vol. 16(1), pages 1-12, December.
  14. Yanjun Sun & Lisa M. Giocomo, 2022. "Neural circuit dynamics of drug-context associative learning in the mouse hippocampus," Nature Communications, Nature, vol. 13(1), pages 1-19, December.
  15. Lloyd E. Russell & Mehmet Fişek & Zidan Yang & Lynn Pei Tan & Adam M. Packer & Henry W. P. Dalgleish & Selmaan N. Chettih & Christopher D. Harvey & Michael Häusser, 2024. "The influence of cortical activity on perception depends on behavioral state and sensory context," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
  16. Johannes Friedrich & Weijian Yang & Daniel Soudry & Yu Mu & Misha B Ahrens & Rafael Yuste & Darcy S Peterka & Liam Paninski, 2017. "Multi-scale approaches for high-speed imaging and analysis of large neural populations," PLOS Computational Biology, Public Library of Science, vol. 13(8), pages 1-24, August.
  17. M. Angeles Rabadan & Estanislao Daniel De La Cruz & Sneha B. Rao & Yannan Chen & Cheng Gong & Gregg Crabtree & Bin Xu & Sander Markx & Joseph A. Gogos & Rafael Yuste & Raju Tomer, 2022. "An in vitro model of neuronal ensembles," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
  18. Benjamin Antin & Masato Sadahiro & Marta Gajowa & Marcus A Triplett & Hillel Adesnik & Liam Paninski, 2024. "Removing direct photocurrent artifacts in optogenetic connectivity mapping data via constrained matrix factorization," PLOS Computational Biology, Public Library of Science, vol. 20(5), pages 1-32, May.
  19. Laura D'Angelo & Antonio Canale & Zhaoxia Yu & Michele Guindani, 2023. "Bayesian nonparametric analysis for the detection of spikes in noisy calcium imaging data," Biometrics, The International Biometric Society, vol. 79(2), pages 1370-1382, June.
  20. David G. Lee & Caroline A. McLachlan & Ramon Nogueira & Osung Kwon & Alanna E. Carey & Garrett House & Gavin D. Lagani & Danielle LaMay & Stefano Fusi & Jerry L. Chen, 2024. "Perirhinal cortex learns a predictive map of the task environment," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
  21. Fengtong Du & Miguel Angel Núñez-Ochoa & Marius Pachitariu & Carsen Stringer, 2025. "A simplified minimodel of visual cortical neurons," Nature Communications, Nature, vol. 16(1), pages 1-13, December.
  22. Celia M. Gagliardi & Marc E. Normandin & Alexandra T. Keinath & Joshua B. Julian & Matthew R. Lopez & Manuel-Miguel Ramos-Alvarez & Russell A. Epstein & Isabel A. Muzzio, 2024. "Distinct neural mechanisms for heading retrieval and context recognition in the hippocampus during spatial reorientation," Nature Communications, Nature, vol. 15(1), pages 1-22, December.
  23. Alexandra T. Keinath & Coralie-Anne Mosser & Mark P. Brandon, 2022. "The representation of context in mouse hippocampus is preserved despite neural drift," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
  24. Kevin K. Sit & Michael J. Goard, 2023. "Coregistration of heading to visual cues in retrosplenial cortex," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
  25. Philipp Berens & Jeremy Freeman & Thomas Deneux & Nikolay Chenkov & Thomas McColgan & Artur Speiser & Jakob H Macke & Srinivas C Turaga & Patrick Mineault & Peter Rupprecht & Stephan Gerhard & Rainer , 2018. "Community-based benchmarking improves spike rate inference from two-photon calcium imaging data," PLOS Computational Biology, Public Library of Science, vol. 14(5), pages 1-13, May.
  26. Daniel M. Virga & Stevie Hamilton & Bertha Osei & Abigail Morgan & Parker Kneis & Emiliano Zamponi & Natalie J. Park & Victoria L. Hewitt & David Zhang & Kevin C. Gonzalez & Fiona M. Russell & D. Grah, 2024. "Activity-dependent compartmentalization of dendritic mitochondria morphology through local regulation of fusion-fission balance in neurons in vivo," Nature Communications, Nature, vol. 15(1), pages 1-21, December.
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