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Isotropic reconstruction for electron tomography with deep learning

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Cited by:

  1. Koki Nakamura & Saeko Aoyama-Ishiwatari & Takahiro Nagao & Mohammadreza Paaran & Christopher J. Obara & Yui Sakurai-Saito & Jake Johnston & Yudan Du & Shogo Suga & Masafumi Tsuboi & Makoto Nakakido & , 2025. "Mitochondrial complexity is regulated at ER-mitochondria contact sites via PDZD8-FKBP8 tethering," Nature Communications, Nature, vol. 16(1), pages 1-23, December.
  2. Haonan Zhang & Yan Li & Yanan Liu & Dongyu Li & Lin Wang & Kai Song & Keyan Bao & Ping Zhu, 2023. "A method for restoring signals and revealing individual macromolecule states in cryo-ET, REST," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
  3. Simon Wiedemann & Reinhard Heckel, 2024. "A deep learning method for simultaneous denoising and missing wedge reconstruction in cryogenic electron tomography," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
  4. Yang Huang & Feibo Song & Yuanjun Zeng & Hui Sun & Roufang Sheng & Xuechun Wang & Liqin Liu & Guoxing Luo & Yanan Jiang & Yaling Chen & Mengxuan Zhang & Shiyin Zhang & Ying Gu & Hai Yu & Shaowei Li & , 2025. "A single residue switch mediates the broad neutralization of Rotaviruses," Nature Communications, Nature, vol. 16(1), pages 1-15, December.
  5. Casper Berger & Helena Watson & James H. Naismith & Maud Dumoux & Michael Grange, 2025. "Xenon plasma focused ion beam lamella fabrication on high-pressure frozen specimens for structural cell biology," Nature Communications, Nature, vol. 16(1), pages 1-12, December.
  6. Caner Akıl & Jialu Xu & Juan Shen & Peijun Zhang, 2025. "Unveiling the structural spectrum of SARS-CoV-2 fusion by in situ cryo-ET," Nature Communications, Nature, vol. 16(1), pages 1-12, December.
  7. Nikita Balyschew & Artsemi Yushkevich & Vasilii Mikirtumov & Ricardo M. Sanchez & Thiemo Sprink & Mikhail Kudryashev, 2023. "Streamlined structure determination by cryo-electron tomography and subtomogram averaging using TomoBEAR," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
  8. Xueming Meng & Cong Xu & Jiawei Li & Benhua Qiu & Jiajun Luo & Qin Hong & Yujie Tong & Chuyu Fang & Yanyan Feng & Rui Ma & Xiangyi Shi & Cheng Lin & Chen Pan & Xueliang Zhu & Xiumin Yan & Yao Cong, 2024. "Multi-scale structures of the mammalian radial spoke and divergence of axonemal complexes in ependymal cilia," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
  9. Michelle M. Shimogawa & Angeline S. Wijono & Hui Wang & Jiayan Zhang & Jihui Sha & Natasha Szombathy & Sabeeca Vadakkan & Paula Pelayo & Keya Jonnalagadda & James Wohlschlegel & Z. Hong Zhou & Kent L., 2023. "FAP106 is an interaction hub for assembling microtubule inner proteins at the cilium inner junction," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
  10. Shuzhen Yang & Shanshan Ma & Chengxian Yuan & Zhixun Li & Fanbiao Ji & Luming Yao & Huiting Cui & Qiang Guo & Jing Yuan, 2025. "A basal body microtubule singlet-to-doublet transition in Plasmodium male gametogenesis," Nature Communications, Nature, vol. 16(1), pages 1-19, December.
  11. Kai-En Chen & Vikas A. Tillu & Navin Gopaldass & Sudeshna Roy Chowdhury & Natalya Leneva & Oleksiy Kovtun & Juanfang Ruan & Qian Guo & Nicholas Ariotti & Andreas Mayer & Brett M. Collins, 2025. "Molecular basis for the assembly of the Vps5-Vps17 SNX-BAR proteins with Retromer," Nature Communications, Nature, vol. 16(1), pages 1-19, December.
  12. Xiaofeng Yan & Shudong Li & Weilin Huang & Hao Wang & Tianfang Zhao & Mingtao Huang & Niyun Zhou & Yuan Shen & Xueming Li, 2025. "MPicker: visualizing and picking membrane proteins for cryo-electron tomography," Nature Communications, Nature, vol. 16(1), pages 1-13, December.
  13. Deborah Moser & Konrad Lang & Alexandra N. Birtasu & Florian Grahammer & Martin Helmstädter & Margot P. Scheffer & Tobias Hermle & Achilleas S. Frangakis, 2025. "The slit diaphragm in Drosophila exhibits a bilayered, fishnet architecture," Nature Communications, Nature, vol. 16(1), pages 1-10, December.
  14. Bryan S. Sibert & Joseph Y. Kim & Jie E. Yang & Zunlong Ke & Christopher C. Stobart & Martin L. Moore & Elizabeth R. Wright, 2024. "Assembly of respiratory syncytial virus matrix protein lattice and its coordination with fusion glycoprotein trimers," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
  15. Conny Leistner & Martin Wilkinson & Ailidh Burgess & Megan Lovatt & Stanley Goodbody & Yong Xu & Susan Deuchars & Sheena E. Radford & Neil A. Ranson & René A. W. Frank, 2023. "The in-tissue molecular architecture of β-amyloid pathology in the mammalian brain," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
  16. Iskander Khusainov & Natalie Romanov & Camille Goemans & Beata Turoňová & Christian E. Zimmerli & Sonja Welsch & Julian D. Langer & Athanasios Typas & Martin Beck, 2024. "Bactericidal effect of tetracycline in E. coli strain ED1a may be associated with ribosome dysfunction," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
  17. Ravi Chawla & Jenna K. A. Tom & Tumara Boyd & Nicholas H. Tu & Tanxi Bai & Danielle A. Grotjahn & Donghyun Park & Ashok A. Deniz & Lisa R. Racki, 2024. "Reentrant DNA shells tune polyphosphate condensate size," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
  18. Liming Zheng & Jie Xu & Weihua Wang & Xiaoyin Gao & Chao Zhao & Weijun Guo & Luzhao Sun & Hang Cheng & Fanhao Meng & Buhang Chen & Weiyu Sun & Xia Jia & Xiong Zhou & Kai Wu & Zhongfan Liu & Feng Ding , 2024. "Self-assembled superstructure alleviates air-water interface effect in cryo-EM," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
  19. Tim Schulte & Antonio Chaves-Sanjuan & Valentina Speranzini & Kevin Sicking & Melissa Milazzo & Giulia Mazzini & Paola Rognoni & Serena Caminito & Paolo Milani & Chiara Marabelli & Alessandro Corbelli, 2024. "Helical superstructures between amyloid and collagen in cardiac fibrils from a patient with AL amyloidosis," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
  20. Kaitlyn M. Abe & Gan Li & Qixiang He & Timothy Grant & Ci Ji Lim, 2024. "Small LEA proteins mitigate air-water interface damage to fragile cryo-EM samples during plunge freezing," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
  21. Willy W. Sun & Dennis J. Michalak & Kem A. Sochacki & Prasanthi Kunamaneni & Marco A. Alfonzo-Méndez & Andreas M. Arnold & Marie-Paule Strub & Jenny E. Hinshaw & Justin W. Taraska, 2025. "Cryo-electron tomography pipeline for plasma membranes," Nature Communications, Nature, vol. 16(1), pages 1-14, December.
  22. Xiaoyu Liu & Xian Xia & Michael W. Martynowycz & Tamir Gonen & Z. Hong Zhou, 2024. "Molecular sociology of virus-induced cellular condensates supporting reovirus assembly and replication," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
  23. Yitang Zhang & Maofei Chen & Xudong Chen & Minghui Zhang & Jian Yin & Zi Yang & Xin Gao & Sensen Zhang & Maojun Yang, 2024. "Molecular architecture of the mammalian 2-oxoglutarate dehydrogenase complex," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
  24. Rebeccah A. Warmack & Ailiena O. Maggiolo & Andres Orta & Belinda B. Wenke & James B. Howard & Douglas C. Rees, 2023. "Structural consequences of turnover-induced homocitrate loss in nitrogenase," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
  25. Nadav Elad & Zhen Hou & Maud Dumoux & Alireza Ramezani & Juan R. Perilla & Peijun Zhang, 2025. "In-cell structure and variability of pyrenoid Rubisco," Nature Communications, Nature, vol. 16(1), pages 1-13, December.
  26. Un Seng Chio & Eugene Palovcak & Anton A. A. Smith & Henriette Autzen & Elise N. Muñoz & Zanlin Yu & Feng Wang & David A. Agard & Jean-Paul Armache & Geeta J. Narlikar & Yifan Cheng, 2024. "Functionalized graphene-oxide grids enable high-resolution cryo-EM structures of the SNF2h-nucleosome complex without crosslinking," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
  27. Zhen Hou & Frank Nightingale & Yanan Zhu & Craig MacGregor-Chatwin & Peijun Zhang, 2023. "Structure of native chromatin fibres revealed by Cryo-ET in situ," Nature Communications, Nature, vol. 14(1), pages 1-7, December.
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