IDEAS home Printed from
   My bibliography  Save this paper

Haplotype analysis of case-control data using haplologit: New features


  • Yulia Marchenko

    () (StataCorp)


In haplotype-association studies, the risk of a disease is often determined not only by the presence of certain haplotypes but also by their interactions with various environmental factors. The detection of such interactions with case-control data is a challenging task and often requires very large samples. This prompted the development of more efficient estimation methods for analyzing case-control genetic data. The haplologit command implements efficient semiparametric methods, recently proposed in the literature, for fitting haplotype-environment models in the very important special cases of 1) a rare disease, 2) a single candidate gene in Hardy-Weinberg equilibrium, and 3) independence of genetic and environmental factors. In this presentation, I will describe new features of the haplologit command.

Suggested Citation

  • Yulia Marchenko, 2010. "Haplotype analysis of case-control data using haplologit: New features," United Kingdom Stata Users' Group Meetings 2010 08, Stata Users Group.
  • Handle: RePEc:boc:usug10:08

    Download full text from publisher

    File URL:
    Download Restriction: no

    More about this item


    Access and download statistics


    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:boc:usug10:08. See general information about how to correct material in RePEc.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: (Christopher F Baum). General contact details of provider: .

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    We have no references for this item. You can help adding them by using this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service hosted by the Research Division of the Federal Reserve Bank of St. Louis . RePEc uses bibliographic data supplied by the respective publishers.