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ZI-Closure Scheme: A Method to Solve and Study Stochastic Reaction Networks

In: Stochastic Processes, Multiscale Modeling, and Numerical Methods for Computational Cellular Biology

Author

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  • M. Vlysidis

    (University of Minnesota, Department of Chemical Engineering and Materials Science)

  • P. H. Constantino

    (University of Minnesota, Department of Chemical Engineering and Materials Science)

  • Y. N. Kaznessis

    (University of Minnesota, Department of Chemical Engineering and Materials Science)

Abstract

We use an example to present in exhaustive detail the algorithmic steps of the zero-information (ZI) closure scheme (Smadbeck and Kaznessis, Proc Natl Acad Sci USA 110:14261–14265, 2013). ZI-closure is a method for solving the chemical master equation (CME) of stochastic chemical reaction networks.

Suggested Citation

  • M. Vlysidis & P. H. Constantino & Y. N. Kaznessis, 2017. "ZI-Closure Scheme: A Method to Solve and Study Stochastic Reaction Networks," Springer Books, in: David Holcman (ed.), Stochastic Processes, Multiscale Modeling, and Numerical Methods for Computational Cellular Biology, pages 159-174, Springer.
  • Handle: RePEc:spr:sprchp:978-3-319-62627-7_8
    DOI: 10.1007/978-3-319-62627-7_8
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