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VCF: Stata module to import VCF (Variant Caller Format) Files into Stata and format genotype data

Author

Listed:
  • Daniel E. Cook

    (University of Iowa)

Programming Language

Stata

Abstract

This program does 2 challenging things: (1) Splits the INFO column (delimited by ;) into separate columns. It also pulls out variable descriptions and assigns them as variable labels.{p_end} (2) Recodes genotypic data, showing the genotypes of each individual.{p_end}

Suggested Citation

  • Daniel E. Cook, 2012. "VCF: Stata module to import VCF (Variant Caller Format) Files into Stata and format genotype data," Statistical Software Components S457570, Boston College Department of Economics.
    • Handle: RePEc:boc:bocode:s457570
    Note: This module should be installed from within Stata by typing "ssc install vcf". The module is made available under terms of the GPL v3 (https://www.gnu.org/licenses/gpl-3.0.txt). Windows users should not attempt to download these files with a web browser.
    as

    Download full text from publisher

    File URL: http://fmwww.bc.edu/repec/bocode/v/vcf.ado
    File Function: program code
    Download Restriction: no
    File URL: http://fmwww.bc.edu/repec/bocode/v/vcf.sthlp
    File Function: help file
    Download Restriction: no
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