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Updating Binding Moad — Data Management And Information Workflow

Author

Listed:
  • MARK L. BENSON

    (Departments of Medicinal Chemistry, Bioinformatics, and Biophysics, University of Michigan, Ann Arbor, 428 Church St. Ann Arbor MI 48109-1065, USA)

  • RICHARD D. SMITH

    (Departments of Medicinal Chemistry, Bioinformatics, and Biophysics, University of Michigan, Ann Arbor, 428 Church St. Ann Arbor MI 48109-1065, USA)

  • NICKOLAY A. KHAZANOV

    (Departments of Medicinal Chemistry, Bioinformatics, and Biophysics, University of Michigan, Ann Arbor, 428 Church St. Ann Arbor MI 48109-1065, USA)

  • HEATHER A. CARLSON

    (Departments of Medicinal Chemistry, Bioinformatics, and Biophysics, University of Michigan, Ann Arbor, 428 Church St. Ann Arbor MI 48109-1065, USA)

  • BRANDON DIMCHEFF

    (Torrey Path, LLC 255 East Liberty Street, Suite 273 Ann Arbor, MI 48104, USA)

  • PETER DRESSLAR

    (Torrey Path, LLC 255 East Liberty Street, Suite 273 Ann Arbor, MI 48104, USA)

Abstract

Binding MOAD (Mother of All Databases) is the largest collection of high-quality, protein-ligand complexes available from the Protein Data Bank. It has grown to 9837 hand-curated entries. Here, we describe our semi-annual updating procedures and BUDA (Binding Unstructured Data Analysis), a custom workflow tool that incorporates natural language processing technologies to facilitate the annotation process.

Suggested Citation

  • Mark L. Benson & Richard D. Smith & Nickolay A. Khazanov & Heather A. Carlson & Brandon Dimcheff & Peter Dresslar, 2010. "Updating Binding Moad — Data Management And Information Workflow," New Mathematics and Natural Computation (NMNC), World Scientific Publishing Co. Pte. Ltd., vol. 6(01), pages 49-56.
    • Handle: RePEc:wsi:nmncxx:v:06:y:2010:i:01:n:s1793005710001608
    DOI: 10.1142/S1793005710001608
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