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graphiclasso: Graphical lasso for learning sparse inverse-covariance matrices

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  • Aramayis Dallakyan

    (StataCorp)

Abstract

In modern multivariate statistics, where high-dimensional datasets are ubiquitous, learning large (inverse-) covariance matrices is imperative for data analysis. A popular approach to estimating a large inverse-covariance matrix is to regularize the Gaussian log-likelihood function by imposing a convex penalty function. In a seminal article, Friedman, Hastie, and Tibshirani (2008, Biostatis- tics 9: 432–441) proposed a graphical lasso (Glasso) algorithm to efficiently esti- mate sparse inverse-covariance matrices from the convex regularized log-likelihood function. In this article, I first explore the Glasso algorithm and then introduce a new graphiclasso command for the large inverse-covariance matrix estima- tion. Moreover, I provide a useful command for tuning parameter selection in the Glasso algorithm using the extended Bayesian information criterion, the Akaike information criterion, and cross-validation. I demonstrate the use of Glasso using simulation results and real-world data analysis.

Suggested Citation

  • Aramayis Dallakyan, 2022. "graphiclasso: Graphical lasso for learning sparse inverse-covariance matrices," Stata Journal, StataCorp LP, vol. 22(3), pages 625-642, September.
  • Handle: RePEc:tsj:stataj:y:22:y:2022:i:3:p:625-642
    DOI: 10.1177/1536867X221124538
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