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Using Stata with PHASE and Haploview: Commands for importing and exporting data


  • J. Charles Huber Jr.

    () (Texas A&M Health Science Center School of Rural Public Health)


Modern genetics studies require the use of many specialty software programs for various aspects of the statistical analysis. PHASE is a program often used to reconstruct haplotypes from genotype data, and Haploview is a program often used to visualize and analyze single nucleotide polymorphism data. Three new commands are described for performing these three steps: 1) exporting geno- type data stored in Stata to PHASE, 2) importing the resulting inferred haplotypes back into Stata, and 3) exporting the haplotype/single nucleotide polymorphism data from Stata to Haploview. Copyright 2010 by StataCorp LP.

Suggested Citation

  • J. Charles Huber Jr., 2010. "Using Stata with PHASE and Haploview: Commands for importing and exporting data," Stata Journal, StataCorp LP, vol. 10(3), pages 359-368, September.
  • Handle: RePEc:tsj:stataj:v:10:y:2010:i:3:p:359-368
    Note: to access software from within Stata, net describe

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    References listed on IDEAS

    1. Roger Newson, 2002. "Parameters behind "nonparametric" statistics: Kendall's tau,Somers' D and median differences," Stata Journal, StataCorp LP, vol. 2(1), pages 45-64, February.
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