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Improved Small-Sample Estimation of Nonlinear Cross-Validated Prediction Metrics

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  • David Benkeser
  • Maya Petersen
  • Mark J. van der Laan

Abstract

When predicting an outcome is the scientific goal, one must decide on a metric by which to evaluate the quality of predictions. We consider the problem of measuring the performance of a prediction algorithm with the same data that were used to train the algorithm. Typical approaches involve bootstrapping or cross-validation. However, we demonstrate that bootstrap-based approaches often fail and standard cross-validation estimators may perform poorly. We provide a general study of cross-validation-based estimators that highlights the source of this poor performance, and propose an alternative framework for estimation using techniques from the efficiency theory literature. We provide a theorem establishing the weak convergence of our estimators. The general theorem is applied in detail to two specific examples and we discuss possible extensions to other parameters of interest. For the two explicit examples that we consider, our estimators demonstrate remarkable finite-sample improvements over standard approaches. Supplementary materials for this article are available online.

Suggested Citation

  • David Benkeser & Maya Petersen & Mark J. van der Laan, 2020. "Improved Small-Sample Estimation of Nonlinear Cross-Validated Prediction Metrics," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 115(532), pages 1917-1932, December.
  • Handle: RePEc:taf:jnlasa:v:115:y:2020:i:532:p:1917-1932
    DOI: 10.1080/01621459.2019.1668794
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    Cited by:

    1. Mikel Tous-Espelosin & Sonia Ruiz de Azua & Nagore Iriarte-Yoller & Pedro M. Sanchez & Edorta Elizagarate & Agurne Sampedro & Sara Maldonado-Martín, 2021. "Cross-Validation of Predictive Equation for Cardiorespiratory Fitness by Modified Shuttle Walk Test in Adults with Schizophrenia: A Secondary Analysis of the CORTEX-SP Study," IJERPH, MDPI, vol. 18(21), pages 1-9, October.

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